RNA id: XM_034300038.1


Basic Information

Item Value
RNA id XM_034300038.1
length 5955
RNA type mRNA
GC content 0.50
exon number 36
gene id pdcd11
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 8710383 ~ 8740417 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGTAGCTCGGCTTGGGTTGTTTGTTTCCGGGTCACAAACATGGCACGCTTTTGAGAAGAACATGTGAGTCTGTGGCTGTAGTAGCAGATCAGGAGTTATTAAAAGAGATCAGATTGGAGAaaATATTTGTGTTGAACCAGCATGGCGTCAGCAGAAGAGGATTTCCCTCGTGGTGGCCCAATCAAGAAAACCTCTGAGCAGAAAACTTCAAAAACTACAAAGCATCATGTGGAAGTGGACAATCTTTTTGAGACTCGAGAACCTGtagtgaaaaagaagaagaaagcagcGAGTAAGCATGAAGATGAAAAGGTGGCCAAAAGGCAGAAAACTGAAGGAGGTCTGAAGCTTAACACAACAGCCAGTGTGGATATCCTCCATATGAAGAATCTGAAGGTGGGCACGGTGATGCTCGGCTGTGTGAGGGAGCTCTTAAACTTTGAGGTTGTACTTGGTCTCCCCAGTGGTCTTAAAGGCTACATGCCTATCTCGGGCATTTGCGATGCCTACACGAAGATCTTGAGCAACGCACTGGACTCTGGGACAGATCTCGAGGAACTTGTGTCTCCCTCGCACCTCCTCGCCCCGGGCCAGCTGGTCAGGTGTGTGGTGTCGTCTCTGGATTTGTCCAAAGAGGGCTTTGTCAGTCTCAAATTGTCCATCAACCCGAAAGACGTGAACAAGGAGCTCAACTCCAGCTCTCTGAAAGCAGGCATGACTCTGAGTGGTTGTGTGGAGAGCGTTGAGGATCACGGTTACCTGATAGACATTGGAGTGAGTGGAACGAAAGCCTTCCTGCCcaaagagaaagcaaaggatGAAGCTGAGACACCTAAAAGAGATCTGAAGGTGGGTCAGTATGTGACGGCCCTGCTGGAGGAGGTAAAGAACGAGGGACGCGTGGTGCGTCTTTCCGTGAACCCTACAGCTGTTAATCAAGCCTGCGCAGAGACACATCACGGCTGGACATTGAGTAACCTTTCACCCGGGCTTATGGTTCAAACCTGCATCAAGAAGGTGACAGCTCACGGCCTGATAGTCACATTCCTCTCATCTTATACCGGCCTGGTGGACTTCATGCACATCGACCCAGATAAACTGTCCACTTACAATGTAGGGGATGAGGTGAAAGCTCGTATCCTGTATGTGGATTCGTCCTCTCGCCTGGTGGGTCTGTCTCTGCGCAGCCATCTCCTACCACCAGGGGGCGTCATATTGGACAATGTAACGAGTGAGAGAATCGGGGAGGTGCTGAAGGGCTGCAAGATGACTGCTGTGCACCACCACTCTGGAGCAGTGATGGAGCTGCCAGACAGCACCACCGCCTTCGTGCACAGAAGCCATTTGAAAGAATCCAATGGGGAGTTTAACCCAAACCGACTCCTTGCtcagcctgaacacacactgagaataaCAGACTACAGCCCAATTGAGCAGATCCACGTGGCCACACTGcgcaaGGCAATCATCGAAGTGCCCTTCTTCAGCTATCAAGATATTAAACCAGGGCAGATAGTTGAGGGCACGGTGCAGAGCCTGGAGAAGTACGGCATGCATGTCAAAATCTCAGACCATATTAAAGGCCTCGTTCCCAGAATTCACCTGGCTGACATCATCCTCACCAACCCTGAAAAAaagtacaaggaaggcatgagGGTTAAATGTAAAGTTTTATCAGTGGACTACCAAAATAAGAAGATCactctgaccaggaaaaaggCTCTAATGGAGACATCACTCCCTCTTTTCCTGTCGTACACGGACGCCCGTGTGGGTCTTGTCTCTCATGGTTTCATTGTCTGCATCAAAGATTTTGGCTGCATTGTAAGATTCTACGGTGATGTTAAGGGCCTGGTGCCGACGTCTGAGCTGACCTCAGAGCCCTCCAACAACCCACAGAATCTTTTTTACTTGGGACAGGTGGTGAAAGCCAAAGTGCTTAAGTGTGATGCTGAAAATGAGAAACTGCTCCTGTCCTTTAAAGCAGTGACTCAAAATGACATTGAGAAGGTCCAAAGTGTCAAGTTCGACTTTGAAATCGGAAAGAAAGTGGAAGTGATTGTACGCAAGAAATGCCAGACTGGCCTTGAAGTGTCTATTCTCCCAGAAGAGATGCCTGCTCTGCTTCCCACAGTGCACCTCTCTGACCACATGACCAACGGCCCTCTGCTGTGGGCGGGGCTACAGGAGGGAGACACCATCTCCAATGTTGTGTGTCTGAGCAGAAACAAGCAAAACATTATTCTCAGTAAGAAGCCCTCGCTGATTGCAGCTCTAGAGGCAGAAAACTTAGTTTCGTCTTTCTCGGAGCTGCAGGTGGGGATGGTGATGGTGGGCTGGGTGAAGAGCATCATGTCCTACGGCGTGTTTGTCGACTTCCCTCACGGACTGTTTGGCCTTGCACCCAAAGCTGCCATGAGTGATAAGTTCATCACAGATACCGCAGGAGTGTTTGAGGTAGGACAGACAGTGCTGGCCAAGGTGACTAACTTGGATGAGGAGAAGCGCCGGTTCTTGATCAGCCTGAAGGTGTCAGAGGTGAGCTGGGCAGAGAGTGACACCCAGGCCAGACTGATCCAGGGTCAGCGCGAAAGAATAGCCTTCTACGACGCAATGAGCTCGAAAGCTGACTCGGACTTGCTGCAGCAGCTCTCCTCTGTGTCACTTGGGGATAAACTGAAGATGACGGTCGACATGACTAGAGAGGACGGCTCGGTCCTCCTGACCTCGGATCAGCTCAGCCATGCCACAGTGCTGGCCTCCAAGTACCACGTAACAGATGTGAACACAACTCCAGGCAATCAGGTGACTGCTGTGGTGCTTCATGTTGACTTTTTGACCTCTGAGGTGCATGTGTCCCTCCTGCCAAAGCTCACGGTGAAGAAAAAAACGTTAAATAAAGACTCCCAGCACACCGCAACAATCCAGTACATGGACAAAGACTTTGCCGTAATCTCATTGGGCGACACCGGTCACCTGACTGTGATTTCCTCAACCACTCACCTAAACGAAATGTTCCGCTTCAAATCAGAAAAGCTGTCCGTGGGTCGTGATATAACTGTGACCGTAACTGAGCCAAGCAGTGAACATCTGGGTGGGCGAGCTCTCGTAGAATATCAGCtctcacctaaaaaaaaaagcagcacgTCTCAGAACAGAGGAGAAGAACACAAATATAAGATTGGGGACTTTGTGACGGCGAAGATTAAAACCGTCAAACCTCTGTGTGTACTCGTGACTTTGCCGGATGGAGTCACGGGAAGCGTGCACGTTTCTCAGGTACACGAATCGCCCAAAGTAGGAGGATTCCCCACGTCGTCCCTGAAGGTCGGCACTGAAGTTAACGGAAGGGTCATCGGCGCTCGTGAGATCCACAGCCACAgGtttctctctatcacacatCCCAACTTTGTCTTCTCTCTGCCTGAGCTCACACTTCTCCCCAGTAAACTGAATGATGATGTGACTGTCGCCTCACTGGAGAACAAGCCGAAACTGGAGAGCTATAAACCTGGACAGGAAATCGTGTGCTATGTATCTAAATACCTTCCACAGCCAAAGTGTCTTGTGGTTGCTGTGTCTCCGAACGTCTTTGGATCCGTGGAGCTGCTGGCTATGATCAATAAACCTAGAGAGGCAAATCACCCACAAAAGCTCTTCAAACATGGCCAGTGTGTCTCCGCGAAGGTCGTCGGCATCAACCCCAAAAAGCCTCAGCAGCTCAAACTTTCCCTTACAGGGACGCACACTCTCGAGAAGGGGGTCGTTACCATGGGCATGGTGCGGAAAATCATCCCCCAGATGGGCTTGATTCTGAATCTGCCGTTCGGGAATTCCGGCTTGGCGTGTATAACCGATTTAACAGACGAGTACGTGGATGCGCCGTTTGAGCAGTACAAAGAAGGCCAGGTGGTCAGATGCTGTGTTACTGGTGAAAAAGACGGAAAGTTCCAGGTGTCCCTGCGTCTGTCCAGGATCCACTCTGGTAAGGCCTTGCCAGTCAAAGACGTGGACATCAGCTCTGTCTCGGAGCTCCAGGAGGGACAGATCATCCAAGGTTATGTAAAGAACGTTGGAGAAAAGGGCATATTTGTGAGGTTATCCAGATCAGTCACGGGAAGAGTCCTGTTCCAATACGCCACAAACTACTTTGCAAGCGACTCTGACCTGTTCCCCAAACACGtctcccagaatgcactgctgaCAACCAAAGTTCTCCACATTGACGCACACACCGGCCATGTGGACCTCTCCTTGCTCCCAGAGGACACTGGAAAAGCAGACATTCTCCCAGAATCCCTTGGGCTTCCGTTGCGCCTGAGGGGAAAGGAAAAGGAGGAGTATGACAAGAAGAATGCCACAAAGAAGCGCAAGATGTCTGAGAGCAAGCAGAACGAAGCGGGGCAACCGAAGAAactaaagaaagaagaaaaggatgCAGAGATCAAGAAGAAAAAGCAATTAATGAAGGAGAAGGAGCCGAAGAAGGAGCAAGCTGAAGATCAGGATAGTGGAGTTGAGGTGTATTTTAGAGAAAAAGACAAGgacaaagcaaagaaaaagggtaaAAGAGAGACTGCAGCTCCAGAAGAGCCAGGCAGGCTACAAGTAGCATCTGATTTCTCCTGGGACATAGCGCTGAGCTCTCTCAAACCTGCATCTTCTGCCCAAAACGCGTACGAGTCCAGCGATGATGAGCAAGAAGATCACAGCAagACAGCAAAGAAGTCACGGCGGGAGGCGGAGATGGAGCGTAAGGAGGCAGAGCTCAAGCTCAGCAAGCTGGAGGCGGAGCTCATGGAGCCCTCGGCCCGACCGGAGAGCGCAGAGGCGTTTGAGCGGCTGCTGCTCTCGTCCCCAGACTCGTCTCTGCTCTGGCTGCAGTACATGGCCTTCCAGCTGCAGGCCACACAGATCGAGCAGGCTCGCGCTGTAGCCGAGAGAGCCCTCAAAACCATCTCCTTCAGGGAGGAACAGGAGAAGCTGAATGTGTGGGTAGCTCTGCTCAACCTGGAGAACATGTACGGTACTGAAGAGAGCCTTCAGAAAGTGTTTGAGCGAGCCATTCAGTACTGCGAGCCCCTGCCTGTCTACCAGCAGCTGGCAGATATTTACGCCAAGTCCAACAAGATCAAGGAAGCAGAGAACTTGTATAAGAACATGGTGAAGCGCTTCAAGCAAGAGAAGGCCGTGTGGCAAAGTTACGGGTCCTTCTTGCTGCGTCAGGGACAGAGCGACGCAGCCAATGCTCTCCTCCAGAGGGCGCTGCAGAGTCTGTCCAATAAAGAGCATGTGGACTTGATAGTAAAATTTGCTCGGTTGGAGTTCCAGTACGGGAACGAAGAGCGAGCCAAGGCCATGTTCGAAAAAGTCCTGAGCAGCTACCCCAAACGCACAGATCTGTGGTCTGTCTTTATAGACCTGATGATGAAACATGGCTCGCAGAAAGATGTCAGGGCTCTCTTTGATCGTGTGGTCCACCTGAGTGTGTCAGTGAAAAAGATCAAGTTCTTCTTCAAGCGCTACCTGGACTACGAGAAGAAGCACGGCACACCAGAGAGCATCCAAGCAGTCAAGCAAAAAGCTGTAGAGTATGTGGAGTCAAAAGGGACTGATGCTGCTAACTAGAACAGGCGGGGATTTTGGAACCATTAATCATGGGACCCAGTAAACATGAGGACAGTAATCCTAATTTTGTGGGTTTGGAAGGACAGAATGTATCTTCATTATGCCATTATCTCCGGTTCTTGGTAAAATTGCATCAGTTTTGCTTGTCTGGATTCTTTTGTGGAATCTAATTGACGAACTTAATAGGATTGATGAACAGACATCAGCCTTTTAACCAGAAGAAAACTGAAGCAGATGATTAAGAGGCTGaccagtacatttttttttcaaaataaatggaATAGGAAAATTAAATAGGATtagaagtttttcttttttttttttttt

Function

GO: NA

KEGG:

id description
K14792 RRP5, PDCD11; rRNA biogenesis protein RRP5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU441285 lncRNA downstream 266318 8428604 ~ 8444065 (-) True G372522
TU441222 lncRNA downstream 443194 8261435 ~ 8267189 (-) True LOC113537489
TU441219 lncRNA downstream 506159 8202768 ~ 8204224 (-) True G372471
TU441040 lncRNA downstream 625844 8082963 ~ 8084539 (-) False cars2
TU441021 lncRNA downstream 693995 8016105 ~ 8016388 (-) True G372307
TU441552 lncRNA upstream 34615 8775032 ~ 8788141 (-) True G372742
XR_003403741.2 lncRNA upstream 223168 8963585 ~ 8965621 (-) False LOC113537261
XR_003403742.2 lncRNA upstream 223168 8963585 ~ 8965428 (-) True LOC113537261
TU442113 lncRNA upstream 1019324 9759741 ~ 9759949 (-) True G373288
TU442117 lncRNA upstream 1023202 9763619 ~ 9764526 (-) True G373292
XM_026932404.2 mRNA downstream 13070 8694537 ~ 8697313 (-) True LOC113537765
XM_026931823.2 mRNA downstream 41064 8640512 ~ 8669319 (-) False col17a1a
XM_026931824.2 mRNA downstream 41064 8640512 ~ 8669319 (-) False col17a1a
XM_026931822.2 mRNA downstream 41064 8640512 ~ 8669319 (-) True col17a1a
XM_026932146.2 mRNA downstream 103543 8591407 ~ 8606840 (-) False tsga10
XM_026932249.2 mRNA upstream 3035 8743452 ~ 8752250 (-) False taf5
XM_026932248.2 mRNA upstream 3035 8743452 ~ 8752250 (-) True taf5
XM_026932095.2 mRNA upstream 55950 8796367 ~ 8798248 (-) True msx1b
XM_034299956.1 mRNA upstream 95070 8835487 ~ 8848164 (-) True caly
XM_026932385.2 mRNA upstream 566316 9306733 ~ 9547257 (-) True sorcs3
XR_004577317.1 other downstream 103543 8591407 ~ 8606840 (-) True tsga10
TU441284 other downstream 277959 8429611 ~ 8432424 (-) False LOC113537606
TU441267 other downstream 381357 8320984 ~ 8329026 (-) False timmdc1
TU440974 other downstream 794062 7912466 ~ 7916321 (-) False fam155a
TU440780 other downstream 985588 7718263 ~ 7724795 (-) True G372086
TU442201 other upstream 1138426 9878843 ~ 9918740 (-) True LOC117596103
TU442843 other upstream 2130867 10871284 ~ 10872546 (-) False lipt1
trnar-ucu_14 other upstream 2732463 11472880 ~ 11472971 (-) True trnar-ucu_14
TU444510 other upstream 4568621 13309038 ~ 13315296 (-) False gyg2
trnar-ucu_15 other upstream 4583665 13324082 ~ 13324173 (-) True trnar-ucu_15

Expression Profile