RNA id: XM_034300193.1


Basic Information

Item Value
RNA id XM_034300193.1
length 4460
RNA type mRNA
GC content 0.53
exon number 45
gene id vps8
representative False

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 11769846 ~ 11866324 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCAGCTTCACTTCCGGGGAAAACAAGGATGTAACGGCGAGTGCAGCTGTTTATCAGCGTGAATGATTtgacgttgtgtgtgtgtgtatgtgtgtgtgtgtgtttttaattctgTGTGAGCTCAGGATCAGCTGGACGCTTTTATAATGTCCGAGTCTCCGGATACTCGCAGTCTGGTGTCGGCGTCCTCACAGCTCAATTTAATGGAAATAGATGCTATTGACGACAAAGAGTTCGACATCCCTCAAGTTGACACGCCACCGACTTTAGAGAGTATTCTGAACGAGcctgaggatgaggatgaaccCTTCGTCCTGGAGGACACATGCCTTttgaacacagagaacatggatGCGCATTCCTGTGAGACGTCCTCCCTTGCCAGTTCAGACAGTGGAGACCGTGCACACCTAAAgaggagGAGGAAGGCAGTAGAGACTAATGCGACCGTCCACGGCTCAGTTCTGAGACACAGTGTGCTGAAAGGCATCTCGGCTCAGATCGTCTCCGCTGCTgacaAAGTTGATGCAGGCTTGCCAACAGCGATCACTGTGTCCAGTGTTATCGCTGTGGGAACGTCGCATGGCCTCGCTCTGGTGTTTGATCAGAACCAGGCGCTGAGGCTGTGCTTGGGTACCACGGCGACAGGGGCGGAGTATGGCGCGGTGTCAGCTCTCAGTATTAACCACGACTGCACGCGTCTGCTTTGTGGCTTTGCTAAAGGACAGATCACCATGTGGGATTTGGCTAATGGGAAGCTCCTGCGCACCATCACTGATGCCCACCCACCTGGCACGGCCATTTTGCACGTTAAGTTCACAGATCTGCCGACACTTGCTGTGTGTAACGACAGCGGCGGGTCTGTGTTTGAACTCTCATTCAGGAGGGTGATGGGGATGAGGACATGTGAGTCTCGGTGTTTGTTCAGTGGCAGTAAGGGGGAGGTGTGCTGCGTTGAGCCACTGCACGCAGCCCCTGAGCTTAAAGACCATCCCATCACTCACTACTGCCTGCTGGCCATGGCTTCACTCACCAAGattctAGTGATTGGACTGAAGCCGTCTCTAAAGGTCTGGATGACTTTTCCATACGGCAAGACAGATCCTGCCAGTGTGCCACAGTTGGCGTGGCAGTTTGTAGCTGCACAGAAAGCAGTGAACCCCATCCTCGCCTTCTGTAGAGGAGACACTGTCCACTTCCTGCTGgtgaAGAAGGACGAATCTGGAACTGTCCATGTCATCAAACAGCGACAGCTCCAACTCAACTGTGACCTTATTAGTCTGACATGGCTGAATTCTCGCACGCTGGTGTTGATGGACAGCGGAGAGAAGCTGCACGTGGTGGATCGGCCCAGTCAGGAGGAGCTGGAAACTCTGGACCTGGCCGAGGTGCAGCTCGTCTACAACAGCAGTCATTTTAAATCGCTTGCTACAGGGGGCAACGTCAGCCAGGCCCTGGCTTTGGTGGGAGAGAAGGCGTGTTACCAGTCTGTGTGCAGCTACGGAGGCCAGATCGTCTACCTGGGAACAAAATCTGTCCATGTTATGACCCTCAGAAACTGGAGAGAGCGCGTCGATCACTTATTGAAGCAGGAGAAGTTTACGGAGGCGCTCTCTTTAGCCTGGTCTTTCCATGAAGGCACCGCTAAAGCAGTATTGGGTCTGTTCGGCGACCCTGTCAAGCGGAAGGGAGTGGTGGCTGACAAGATGGTGGAGATCTTGTTCCAGTATGTAGAGCGCATGCTAAAGAAGTGTCCTGAGCAGGGCAAGATCCAGCTGCTGGAGCAACACTTCCAGgACATGATTCCTGTCGTGGTGGATTACTGTCTGCTTCTGCAGAGGACggatCTGCTGTTTAACCAGATCTACTCGAGGCTGGTGGAGAACTCGGTGGCTAAGGGTGTCTTCTTGGAGAGTCTCGAGCCGTACATTCTGAGCGAGCGGATTGGCTGCCTGACAGCGCCCGTCATGAGGGACCTCCTCAGTTACTTCCAAGAAAATGGTATGATGGAGAGTGTGGAGGGCTGCCTGGTGCACATGGACATCACCAACCTGGATATACAGCAGgtggtgcAGATGTGTTGGGATAACCAGCTCTACGATGCCATGATGTACGTGTTCAACAGTGGCATGAACGATTACATCAGCCCCATGgagAAACTCTTTCAGGTGATTGGTCCTCCTTTGCGAGAAGGCAAGCCTCTCACAGATGAACAGGTGGTCATGGGAAATAAGCTGCTCGTCTACATTAGttgTTGTCTAGCAGGACGAGCGTATCCTTTAGGGGACATACCAGAAGACCTTGTGCCACAAGTTAAaaatcaggTGTTTGAGTTCCTGATTCGCCTGCACTCACTAGAGGCCAtccaggaggaggaggtgtaTCCGTACATCCGGACCCTGCTTCACTTCGACACCCGCGAGTTTCTCAACGTTCTGGCGCTGACGTTCGAGGATTTTAAGAATGACAAACAGGCTCTGGAGTACCAGCAAAGGATTGTGGACATTTTACTCAAGGTCATGGTGGATAACTCGGACTTCACCCCGTCCCAGGTGGGCTGCCTGTTCACCTTTCTCGCTCGGCAGCTAGCCAAACCCGACAACACCCTCTTTGTCAACAGGAAGTTGTTTGATCAGGttctggagtttctgtgcaGTCCAGATGATGATTCCAGACACACGGAGAGGCAGCAGGTGCTGTTGGAGTTACTCCAGGTGGGAGGCATGGTCCAGTTCGACGAGGGGCGGCTCCTCGCCCTGGCAGAAAAGGCAGAATTCTATCAGATCTGTGAGTTTTTGTATGAGCAGAAGCATCTTTATGATCAAATCATTGCCTGCTACCTGAAGGACCCCTTAAGAAAGGAGGAGGTTTATAACTACATCCATAACATCCTGTCCATGCCTGGTTACAGCCCAGAGGAGAAGCAGACCGCATGGAACAAATCCTTAGAGCACGTTAAGGAGCTGGTTAGCATTAACCCTGCTAAAGCTGCCGAGCTGGTGGCGGGACACTTCATCAGCGAGGTAGAGCCTATTATCACTGCACTACAGGATGATCATTTGGTGTTCCAGTTCCTGAGGAACTTGCTGAAtccaagcgaTGGGCAGAAGCCTCAGGCTGTTATGGATCTGGGGCCTGAGCTCCACGAGCTCCTGGTGGACTTGATGTGCCGTTTCAGTCCTCGCCAAGTCACCCCTTTCCTCGAGACGTCCCAGAGCTACCGCCTGGAGGAGACCGTTGAAATCACCAAGCAGCATGAGCTACATGAAGCCACCGCCTACCTGCTGGAGAAGAAAGGAGATGTGCAGGGAGCCTTCCAAGTGCTGCTACAGacactAAAGGAGAAGCTGAACACACTTGTCCAGGAGAGTTCAGAGCAGGCCACGCCGAGGCctgagggagaggaggaggaggtagCTGATGAAGATTACACCCCACTGGCCAGGGTGGAGGAAGCCCTTAGTGACATCATCGCACTGTGTCACCGGAGCTCACATGGACTTAACCAGCAgcagagagaggctctctggtttcctctcctAGAGGTCATGATGTCTCCACAAAAATTCCTCAAGGGCCCTAATGCCAAGGACACTTCTgatgCACTGAAAGAGCTCACTATGAAGGTGTTAAACAGCATGTCCAGCTTCATCGCCCTGCCTGCCATCATCCAGCGCATCCTACAGGACCCTGTATATGGGAAGGGAAAGTTAGCAGAGATCCAGGGCCTCATTCTGGGCATGTTGGAAACTTTCAACTATGAAcagACTCTGTTGGAGACCACCACCAATCTTCTGAATTCGGACTTGCACTGGTCTCTGGCTCACCTGCGGAAGGCCGTCAGCAGGGGACTCCACCCTCGACAGGACCACTGCAACATCTGCCTGCAGCAGTACAAAAGGAGGCAAGAGAGCGAGGAGGAGATCATCATCTTCAGCTGTGGTCACCTGTATCACTGTCAGTGCCTGCAGCGGAAGGAGCAAGGGGTTGTTGGTAAAGATCCCGGGCATGTGGGAGATCGGGTTCACTCGTGGAGCTGTTATAAGTGCACGTCCAGTCAGGGAGCTCGTCCCGGAGACCGCCTGCTCGCTGAGGGAGGCCGAGTCCGATCCACTTCTCTGGCCCAGACCAAAGTGACATCCGTCCATCGGGGATCCGCCGCCGAAACTCATCACAGAAAGGAGCTGACTGAAGTGACGCTAGACGCCCAGCAGACGCAGGCGTGGGACCAGCTGCGCTGCATGTACAGAGGACCCTCCAGATTGGCTATCCTCACAGAACTCACCCACTCCCACAGCAGCGAGAGAACCGGCCTGGTAAACCCCACAAACCCAGGAACAGGAAGCATCTACCACAGTGAAAACCTCAGCCTCAAGCTTTCTCCACCACCAATGGTGGAGGAATAGTGCAGACTCCGCCCACTGTTACAGACCTGAATAAAAGCGTTACTGTATCTCTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU443528 lncRNA downstream 14731 11752574 ~ 11755115 (-) True G374495
TU443474 lncRNA downstream 100590 11668993 ~ 11669256 (-) True G374442
TU443394 lncRNA downstream 173607 11595192 ~ 11596239 (-) True G374371
TU443391 lncRNA downstream 174865 11593966 ~ 11594981 (-) True G374370
TU443231 lncRNA downstream 409425 11358843 ~ 11360421 (-) True G374230
TU443718 lncRNA upstream 68210 11934534 ~ 11943075 (-) True G374657
TU443741 lncRNA upstream 97480 11963804 ~ 11964781 (-) True G374680
TU443757 lncRNA upstream 212567 12078891 ~ 12084032 (-) True mzt1
TU443791 lncRNA upstream 226188 12092512 ~ 12092736 (-) True G374727
TU443961 lncRNA upstream 292384 12158708 ~ 12158915 (-) True G374885
XM_026931929.2 mRNA downstream 79326 11666909 ~ 11690520 (-) True march4l
XM_026932394.2 mRNA downstream 217124 11546974 ~ 11552722 (-) True alg11
XM_026931632.2 mRNA downstream 226149 11539380 ~ 11543697 (-) True spp2
XM_034300268.1 mRNA downstream 298459 11467404 ~ 11471387 (-) False pld6
XM_034299877.1 mRNA upstream 25350 11891674 ~ 11937127 (-) True igf2bp2b
XM_034300296.1 mRNA upstream 74828 11941152 ~ 11943095 (-) True LOC117596169
XM_026931942.2 mRNA upstream 79510 11945834 ~ 11953213 (-) True LOC113537469
XM_026931995.2 mRNA upstream 90412 11956736 ~ 11984895 (-) False ubac2
XM_026931994.2 mRNA upstream 90412 11956736 ~ 11984895 (-) True ubac2
trnar-ucu_14 other downstream 296875 11472880 ~ 11472971 (-) True trnar-ucu_14
TU442843 other downstream 897300 10871284 ~ 10872546 (-) False lipt1
TU442201 other downstream 1851106 9878843 ~ 9918740 (-) True LOC117596103
XR_004577317.1 other downstream 3163006 8591407 ~ 8606840 (-) True tsga10
TU441284 other downstream 3337422 8429611 ~ 8432424 (-) False LOC113537606
TU444510 other upstream 1442714 13309038 ~ 13315296 (-) False gyg2
trnar-ucu_15 other upstream 1457758 13324082 ~ 13324173 (-) True trnar-ucu_15
trnar-ucu_16 other upstream 1459193 13325517 ~ 13325608 (-) True trnar-ucu_16
trnar-ucu_17 other upstream 1459669 13325993 ~ 13326084 (-) True trnar-ucu_17
trnar-ucu_18 other upstream 1461728 13328052 ~ 13328143 (-) True trnar-ucu_18

Expression Profile