RNA id: XM_034300403.1


Basic Information

Item Value
RNA id XM_034300403.1
length 984
RNA type mRNA
GC content 0.61
exon number 4
gene id LOC113535779
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 645476 ~ 651428 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGAGGCCGTGCAACCGTGGAGCACAGATGCTCATCACTACAGCTGGAGCTTTTGCTGCTTTCAGCCTCATGACCATCGCAGTAGGAACGGATTATTGGCTTTACTCGCCCGGCGTGTGTCGCACCGAGAGCACAGGCGACAACGAGACCAGCCAGAAGAACGAAGAGGTTCTTACGCATTCGGGCCTCTGGCGTCAGTGCTGCATGGAAGgtctgttcacaggtgtgtgtaaaaacattgATCATTTCCCAGAAGACGGTGAATATGAACAAGATGCAGCAGAATACTTGCTCCgagcaGTACGCGCCTCCAGTCTTTTCCCCATCATGAGTGTTGGGTTGCTGTTTGTTGGTGGAGTTTGTGTCGCCGCCAGTGAGTTCTACAAAAACCGCCACAACGTCATCCTGAGCGCAGGAATATTCTTCGTCTCCGCCGgGCTCAGTAACATCATCGGGATCATTGTGTACATTTCCGCCAACGCCGGAGATCCGAATCAGAGCGAGTCGAAGCGGAGTCACCGGTACGGCTGGAGCTTCTACTGCGGCGCGCTCTCCTTCATCATGGCGGAGACGGTGGGCGCGCTCACGGTGCACCTGTTCATCGACTCGCACCGCACGCGCACCTTCCGCCGCGCGCCCCGGAACCGCGTGCACGCGTCGCTCCAGAGCCGCCGCTCCTCCAGCTACCGCTCGCGCTACCGCGGCCACGCGCACGCGCACGCGCTCCTGCGCTCGCCAGGCGCCGGCCGCCCGAGCAACGACGAGGTCGCGCTCCGTTCGCTCCGTTACGCGCCGGCCACGCCCCTTCATCAAACCGCGCACGCGCCCTACATCAAAGCGGAGAACGGGCTCGCCTTTCACGCGCACAGCCACGGCGCGCATCACGAGGAGCAGAACTCAGGCGCGCTCACGCCGAAGAAAAAATGCGCGCTCCCGACTCTGAGCAGCAGCAGCGCCGCCACGAGGAGAACAACACCGGTGTGA

Function

GO:

id name namespace
GO:0006816 calcium ion transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU437049 lncRNA downstream 53397 591252 ~ 592079 (-) False rasd3
TU437043 lncRNA downstream 63616 578593 ~ 581860 (-) True G368903
TU436801 lncRNA downstream 355597 284881 ~ 289879 (-) False pmm2
TU436824 lncRNA downstream 363573 281439 ~ 281903 (-) True G368725
TU436806 lncRNA downstream 400696 244177 ~ 244780 (-) True G368713
TU437060 lncRNA upstream 20212 671640 ~ 673030 (-) True G368912
TU437062 lncRNA upstream 20212 671640 ~ 673030 (-) False G368912
TU437096 lncRNA upstream 49656 701084 ~ 701288 (-) True G368944
TU437066 lncRNA upstream 50188 701616 ~ 701979 (-) False prkcba
TU437270 lncRNA upstream 218459 869887 ~ 948803 (-) False zgc:77849
XM_026929185.2 mRNA downstream 52881 591136 ~ 592595 (-) True rasd3
XM_026929181.2 mRNA downstream 56080 582498 ~ 589396 (-) True plk1
XM_034299924.1 mRNA downstream 87264 544258 ~ 558212 (-) False chtf18
XM_034300404.1 mRNA upstream 2025 653453 ~ 702345 (-) True prkcba
XM_026929176.2 mRNA upstream 51771 703199 ~ 711315 (-) True tlr2
XM_034300162.1 mRNA upstream 51771 703199 ~ 708240 (-) False tlr2
XM_026928986.2 mRNA upstream 218331 869759 ~ 879270 (-) True zgc:77849
XM_026928831.2 mRNA upstream 245796 897224 ~ 902489 (-) True fscn1b
XR_004577324.1 other downstream 418374 202654 ~ 227102 (-) True si:dkeyp-75b4.8
TU437316 other upstream 260125 911553 ~ 915683 (-) True G369125
TU437448 other upstream 624593 1276021 ~ 1276813 (-) True G369242
XR_004577318.1 other upstream 889934 1541362 ~ 1599744 (-) False nrp2a
TU437816 other upstream 1140759 1792187 ~ 1795224 (-) True G369586
XR_003403632.2 other upstream 1915329 2566757 ~ 2574471 (-) False LOC113535702

Expression Profile