RNA id: XR_003403637.2


Basic Information

Item Value
RNA id XR_003403637.2
length 470
lncRNA type inter_gene
GC content 0.44
exon number 4
gene id LOC113535806
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 2343113 ~ 2345533 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGCCTCTCACTGcaagtgtttgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtttcttatttTCCCTTTATGTAATTAAGACCCATTCCAGCTCTCTGTAATGTCTCTGCACTTCTCCTTAACCTGAAAAGCAAGAGTGTAATTTAGCCAAGAGCACAGGGATGGAAGCACTCGACTCTTCTCTCATctcttcttcatcctcttcgcatttctctttctgtggACAGACAATCAGAGAGTAAAGAGCAGCTGGAACATCACAATAATTAACTGCGTGGAATGTGGTATAAACACGCAGAACGTTCCGGCACCAGATGGTTCGGGGTAATCGCAGTGACAACGCAGTTCCAATGACGGATTCCTATCTGTTCTCCAAAACCAGCTGAGATATACCAAGGCTTCAAACCTGATTCATGAACTTGTGCAAACTGGAACCCAAAATGCAATAGGTCATGAGCAACACCATGaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577295.1 lncRNA downstream 97955 2199025 ~ 2245158 (-) True LOC117596129
XR_004577296.1 lncRNA downstream 97955 2244126 ~ 2245158 (-) False LOC117596129
XR_004577298.1 lncRNA downstream 155171 2186646 ~ 2187942 (-) False LOC117596130
XR_004577297.1 lncRNA downstream 155171 2186646 ~ 2187942 (-) True LOC117596130
XR_004577364.1 lncRNA downstream 198662 2115578 ~ 2144451 (-) True LOC117596194
TU438165 lncRNA upstream 165223 2510756 ~ 2510962 (-) True G369891
TU438184 lncRNA upstream 174965 2520498 ~ 2522127 (-) True G369907
TU438207 lncRNA upstream 210446 2555979 ~ 2558765 (-) True G369924
TU438209 lncRNA upstream 210446 2555979 ~ 2558765 (-) False G369924
TU438210 lncRNA upstream 210446 2555979 ~ 2558765 (-) False G369924
XM_026929032.2 mRNA downstream 11443 2282791 ~ 2331670 (-) True LOC113535598
XM_034300269.1 mRNA downstream 71460 2261289 ~ 2271653 (-) False LOC113535651
XM_034300270.1 mRNA downstream 71470 2261289 ~ 2271643 (-) False LOC113535651
XM_034300271.1 mRNA downstream 76960 2261289 ~ 2266153 (-) True LOC113535651
XM_034300285.1 mRNA downstream 83965 2256421 ~ 2259148 (-) True LOC117596168
XM_026929274.2 mRNA upstream 1695 2347228 ~ 2350989 (-) True LOC113535761
XM_026928728.2 mRNA upstream 155497 2501030 ~ 2515018 (-) False LOC113535442
XM_034299960.1 mRNA upstream 155497 2501030 ~ 2512436 (-) True LOC113535442
XM_026928727.2 mRNA upstream 155497 2501030 ~ 2509139 (-) False LOC113535442
XM_026928963.2 mRNA upstream 177582 2523115 ~ 2542866 (-) True LOC113535562
TU437816 other downstream 547889 1792187 ~ 1795224 (-) True G369586
XR_004577318.1 other downstream 743369 1541362 ~ 1599744 (-) False nrp2a
TU437448 other downstream 1066300 1276021 ~ 1276813 (-) True G369242
TU437316 other downstream 1427430 911553 ~ 915683 (-) True G369125
XR_004577324.1 other downstream 2116011 202654 ~ 227102 (-) True si:dkeyp-75b4.8
XR_003403632.2 other upstream 221224 2566757 ~ 2574471 (-) False LOC113535702
TU438365 other upstream 497679 2843212 ~ 2853211 (-) True LOC117596167
XR_003403643.2 other upstream 2111902 4457435 ~ 4457541 (-) True LOC113535829
XR_004577365.1 other upstream 2113784 4459317 ~ 4459423 (-) True LOC117596196
XR_004577366.1 other upstream 2115676 4461209 ~ 4461315 (-) True LOC117596197

Expression Profile