Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_003403742.2 |
| length | 299 |
| lncRNA type | inter_gene |
| GC content | 0.44 |
| exon number | 2 |
| gene id | LOC113537261 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047620.1 |
| NCBI id | CM018566.1 |
| chromosome length | 19313417 |
| location | 8963585 ~ 8965621 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU441552 | lncRNA | downstream | 175444 | 8775032 ~ 8788141 (-) | True | G372742 |
| TU441285 | lncRNA | downstream | 519520 | 8428604 ~ 8444065 (-) | True | G372522 |
| TU441222 | lncRNA | downstream | 696396 | 8261435 ~ 8267189 (-) | True | LOC113537489 |
| TU441219 | lncRNA | downstream | 759361 | 8202768 ~ 8204224 (-) | True | G372471 |
| TU441040 | lncRNA | downstream | 879046 | 8082963 ~ 8084539 (-) | False | cars2 |
| TU442113 | lncRNA | upstream | 794313 | 9759741 ~ 9759949 (-) | True | G373288 |
| TU442117 | lncRNA | upstream | 798191 | 9763619 ~ 9764526 (-) | True | G373292 |
| TU442121 | lncRNA | upstream | 801611 | 9767039 ~ 9767482 (-) | True | G373296 |
| TU442140 | lncRNA | upstream | 820555 | 9785983 ~ 9786861 (-) | True | G373310 |
| TU442143 | lncRNA | upstream | 820834 | 9786262 ~ 9786861 (-) | False | G373310 |
| XM_034299956.1 | mRNA | downstream | 115421 | 8835487 ~ 8848164 (-) | True | caly |
| XM_026932095.2 | mRNA | downstream | 165337 | 8796367 ~ 8798248 (-) | True | msx1b |
| XM_026932249.2 | mRNA | downstream | 211335 | 8743452 ~ 8752250 (-) | False | taf5 |
| XM_026932248.2 | mRNA | downstream | 211335 | 8743452 ~ 8752250 (-) | True | taf5 |
| XM_034300039.1 | mRNA | downstream | 223196 | 8710383 ~ 8740389 (-) | False | pdcd11 |
| XM_026932385.2 | mRNA | upstream | 341305 | 9306733 ~ 9547257 (-) | True | sorcs3 |
| XM_026932386.2 | mRNA | upstream | 341305 | 9306733 ~ 9388736 (-) | False | sorcs3 |
| XM_026932141.2 | mRNA | upstream | 631586 | 9597014 ~ 9705826 (-) | True | cfap58 |
| XM_034299861.1 | mRNA | upstream | 841744 | 9807172 ~ 9823708 (-) | True | sh3pxd2aa |
| XM_034299863.1 | mRNA | upstream | 913485 | 9878913 ~ 9918779 (-) | False | LOC117596103 |
| XR_004577317.1 | other | downstream | 356745 | 8591407 ~ 8606840 (-) | True | tsga10 |
| TU441284 | other | downstream | 531161 | 8429611 ~ 8432424 (-) | False | LOC113537606 |
| TU441267 | other | downstream | 634559 | 8320984 ~ 8329026 (-) | False | timmdc1 |
| TU440974 | other | downstream | 1047264 | 7912466 ~ 7916321 (-) | False | fam155a |
| TU440780 | other | downstream | 1238790 | 7718263 ~ 7724795 (-) | True | G372086 |
| TU442201 | other | upstream | 913415 | 9878843 ~ 9918740 (-) | True | LOC117596103 |
| TU442843 | other | upstream | 1905856 | 10871284 ~ 10872546 (-) | False | lipt1 |
| trnar-ucu_14 | other | upstream | 2507452 | 11472880 ~ 11472971 (-) | True | trnar-ucu_14 |
| TU444510 | other | upstream | 4343610 | 13309038 ~ 13315296 (-) | False | gyg2 |
| trnar-ucu_15 | other | upstream | 4358654 | 13324082 ~ 13324173 (-) | True | trnar-ucu_15 |
