RNA id: XR_004577287.1


Basic Information

Item Value
RNA id XR_004577287.1
length 1736
lncRNA type sense_over
GC content 0.41
exon number 3
gene id LOC117596123
representative False

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 10676632 ~ 10797197 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCCAATGCAGATACCTGAAGAGCCTCAGTCCTACACATGTCAGTGTCTTCCCTGCTCACTTACCCACTGTTAAtgagctgattagttgaatcagatGTGTTGGGAGAATAACACTATaatgtgcaggacagagtacaaggtactccaggaccaagaTTGGAAATCTGTGGACTAGAGTGTGCCAGTCTCTCCAGGAGGATGCTGGAGCAAGGAAGGGGTTGCCTGGAGCACTGAACTGAAATTCCTACTGTTTAAGATGACTTTTTACACAGTGGTTCGCATGGACATTGGCTAGATCTCCAGCAGAATGTGTGGCCCTAAAGGACAACCCTTCAGAAAAAAACGACCTTGAAACTGATACATTCCCAACAGCTATACAGATTTTTCCTATAGACTAAAATAGGATACTGTCATATTCTGTTGCTTAGAATTTCTCTAAGACCAGCTCTTCCGAGAATTTCAATGAAACTTTTGCTGTTTGTGACACAGATGCATCCATGGCTGTCCTTCAAGTTCATCTAAAACCGGGTGGGCCGAAACCAATTTCCTCTTGTGTAAAGCCAATCTATTCCATGGCTATTGTAGCATGATTAAAAGGCTAAAATGGTTTAGTTAAAATACTCCTAAATCCATAAATGTGTCACATTGATTTCAAATAGGTTTGTAGTGTAGTCATACTGCCCCCTTTTGAATTGAGATGCTTTTTGGACTGAAAACtaccttcatttttttaaaccaccaaaatttctccaaaacattgtgagagactgataaactcctacagaaaacgcTTGCTTCAACTTATTGTTgctactgaattatagggtgtacttattttttctcacctgacttctgaatgttgttttttttgggggaaaaggtttggtttctgtttgtttacagAAGTTGGGGAGGATCACACAATTGATATTTAGgccctgaaaaataaaaacctagaaATGAAGGAGAGTGTACCAtcttttcccatgactgtatgtaaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacctggccTTACCGGTCCAGCTACCCCACAGTCCTGGAGGTCAGCCAAGTCTCATCAATTATCCGTAAGCCAATCCTGCGCGTGAGTGGGAGGGTCTGAGGATCATGTTCTGGTTAATTGGGCCTCCATGCATCAATGTGGCACCAATCAACCTTCAGCTCCTCTCAGGCCTGAACTTCAGACGTCTCATATTCAACTGCTGATTGGACAGATAAAACTGACAAGGAGCCACGGCTAGTAAACAGGATGTGGGAGAGTATTGCTGTTACGAGGATGATTAAATTTGCTCTTGGATTAAGCTTCCTCATTGTAACTTGTGTTTACACAATCTTCATGACCTGTGTGCTTAATCACATGCATGTTTGTGTAAAATGGCGAAGACGTTGTCACGTTTTTATGTACATCTGAATGTTGTAGTTTCCAGGCTGCTTGCACAGCTGAAGGATTTTTATTTCTGGAGCTATTTTTGTACTACATTCATATATTTACACTCTAAAAATGGCTGGGTTAAAAATAATCCAGTTTGGGTCAATTTGGAAACCCTGTGCTCAGCGCGGTTAGGTTGGGTTGTTGACCCAGCATGCATGATTGAATTTTTTAACCCAACTAGTTGGTAAAAATGACTATATTTCTGGGATGTAGATACCCAAGTTGTTATGATTACAGTCCTCAGCTAGCATACTTCTGTCAGCAGACTAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU442685 lncRNA downstream 111708 10495636 ~ 10564924 (-) True G373762
TU442650 lncRNA downstream 253165 10422163 ~ 10423467 (-) False cab39l
TU442628 lncRNA downstream 384054 10290637 ~ 10292578 (-) True LOC113537663
XR_003403786.2 lncRNA downstream 384054 10290643 ~ 10292578 (-) False LOC113537663
TU442626 lncRNA downstream 387259 10288380 ~ 10289373 (-) True G373719
TU443009 lncRNA upstream 133910 10928467 ~ 10929554 (-) True G374040
TU443008 lncRNA upstream 135182 10929739 ~ 10933407 (-) True G374039
TU443070 lncRNA upstream 273174 11067731 ~ 11067952 (-) True G374091
TU443072 lncRNA upstream 290085 11084642 ~ 11120831 (-) False G374093
TU443073 lncRNA upstream 321115 11115672 ~ 11120831 (-) True G374093
XM_026932230.2 mRNA downstream 114925 10529524 ~ 10561707 (-) True tubgcp3
XM_034300222.1 mRNA downstream 161545 10443835 ~ 10515087 (-) False mcf2la
XM_026931952.2 mRNA downstream 182925 10439948 ~ 10493707 (-) False mcf2la
XM_026932043.2 mRNA upstream 11878 10806435 ~ 10838961 (-) True arhgef7b
XM_026932044.2 mRNA upstream 11878 10806435 ~ 10838958 (-) False arhgef7b
XM_026931840.2 mRNA upstream 55819 10850376 ~ 10870096 (-) True eif5b
XM_026932101.2 mRNA upstream 76667 10871224 ~ 10872556 (-) True lipt1
XM_026932231.2 mRNA upstream 139588 10934145 ~ 10946702 (-) False map2k7
TU442201 other downstream 757892 9878843 ~ 9918740 (-) True LOC117596103
XR_004577317.1 other downstream 2069792 8591407 ~ 8606840 (-) True tsga10
TU441284 other downstream 2244208 8429611 ~ 8432424 (-) False LOC113537606
TU441267 other downstream 2347606 8320984 ~ 8329026 (-) False timmdc1
TU440974 other downstream 2760311 7912466 ~ 7916321 (-) False fam155a
TU442843 other upstream 76727 10871284 ~ 10872546 (-) False lipt1
trnar-ucu_14 other upstream 678323 11472880 ~ 11472971 (-) True trnar-ucu_14
TU444510 other upstream 2514481 13309038 ~ 13315296 (-) False gyg2
trnar-ucu_15 other upstream 2529525 13324082 ~ 13324173 (-) True trnar-ucu_15
trnar-ucu_16 other upstream 2530960 13325517 ~ 13325608 (-) True trnar-ucu_16

Expression Profile