RNA id: XR_004577295.1


Basic Information

Item Value
RNA id XR_004577295.1
length 1283
lncRNA type inter_gene
GC content 0.48
exon number 6
gene id LOC117596129
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 2199025 ~ 2245158 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCCCAAGGTGCTCTGAGGTAAAGTTGTGTGAGTGCAGCTTTAGCAACGCGGCTAACAGCCAAAAACGCGGACACAGAGTTAGCCCATGAGGAAATAACGAGGACAAATAAACTCGTATTTACTCCCAGGACAGAGTTTCACCGCGGAATCATTCGTAACATGTGAATTTATGGAAATACGAGCGAAAAAAAATGAAGGCGCTTCGtcttgttctgtgttttgtgctAACGGTTGCTGAGAAGAGTCGCGCGCGCAGGCAGCACTGGACTGCAGGTGTTCTATATGCAGTAGACAGGAGGAGAGGAACGTTCAGCCACTTGAAGACCACAAAAAATTCCCTTGTTGTCATTGTCTGGAGGGCTTTCCCGGCGATGTGGATTTGCCAGCGGTCTGATCAGCTATTGAGTGGCGTCTCGGGAGACCAATCAGGATGGTGAATGGGGTGAGGAGTGTACCCGGCGGAGTCTCGTAGGTTGAATGATCGATGCAGACAGTCGACACGGCTTTGAAGAGCTCGCTGCAGGATGGCGAGAGACCCTTAGAAAGATACCTAGTCATCCAGAGCAACCCCATTGAGGAGAATCCTTTCATCACACATAAATTCATGCTTCAGATAACCCAAGTTACCACAGCAACCATGATGGACAGCAACCCAAGGCTGAGGTTGAGGACATTAACACACTTCTACAGACATGATGATCCAGGAGACAGTGACCTGAAGAAAAGCAGGGTTTCTTTTCCTCCAGTGGACTACAAACAGCCAGCACCCAAACTGAGAGACTTCATCACCACAACAAAGGTGGTCATTTTACACTTACACTGAACCACCAGTTCAGCCTCCTCAAAGTGGACCAATGAGTCAAAATGGCCACCATCTCCATTCAGGTTATGATCTATGTACTGATCATCCCAGTAAGTATCTCTTTCCTTCAGTAACAGGACAAATATGTCACATCTGCCACCAAATCCAGCCTGGTTCTCCTGGACCTGCTCACATCTCACACCAAAACGATGGTGTTATAAGTAGCACTTGCTACTGCTCTACCAGGCCCTGAACATATTTGACTAACCTAAATTCACAGCTTGTGAAACCTGAGGCTTTGAAAATATACTGCTAAAATACTTGTCCTTGTATTTGTTACATGAAGACTAGGGTTCCCTGGCCATAATTATCGATAtcaattcctggccagggaaccaaccccggcaactggggttgcacatgacagtgcactcccagtgccggtcccaagcccggatacaATTGgcgagggttgcatcag

Function

GO: NA

KEGG:

id description
ko04113 Meiosis - yeast

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577298.1 lncRNA downstream 11083 2186646 ~ 2187942 (-) False LOC117596130
XR_004577297.1 lncRNA downstream 11083 2186646 ~ 2187942 (-) True LOC117596130
XR_004577364.1 lncRNA downstream 54574 2115578 ~ 2144451 (-) True LOC117596194
TU437914 lncRNA downstream 177710 2018715 ~ 2021315 (-) True G369663
TU437910 lncRNA downstream 177710 2018918 ~ 2021315 (-) False G369663
XR_004577279.1 lncRNA upstream 97955 2343113 ~ 2345533 (-) False LOC113535806
XR_003403637.2 lncRNA upstream 97955 2343113 ~ 2345533 (-) True LOC113535806
TU438165 lncRNA upstream 265598 2510756 ~ 2510962 (-) True G369891
TU438184 lncRNA upstream 275340 2520498 ~ 2522127 (-) True G369907
TU438207 lncRNA upstream 310821 2555979 ~ 2558765 (-) True G369924
XM_026929215.2 mRNA downstream 261950 1915663 ~ 1937075 (-) True klf7a
XM_034300370.1 mRNA downstream 289651 1895048 ~ 1909374 (-) False LOC113535707
XM_034300285.1 mRNA upstream 11263 2256421 ~ 2259148 (-) True LOC117596168
XM_034300269.1 mRNA upstream 16131 2261289 ~ 2271653 (-) False LOC113535651
XM_034300270.1 mRNA upstream 16131 2261289 ~ 2271643 (-) False LOC113535651
XM_034300271.1 mRNA upstream 16131 2261289 ~ 2266153 (-) True LOC113535651
XM_026929032.2 mRNA upstream 37633 2282791 ~ 2331670 (-) True LOC113535598
TU437816 other downstream 403801 1792187 ~ 1795224 (-) True G369586
XR_004577318.1 other downstream 599281 1541362 ~ 1599744 (-) False nrp2a
TU437448 other downstream 922212 1276021 ~ 1276813 (-) True G369242
TU437316 other downstream 1283342 911553 ~ 915683 (-) True G369125
XR_004577324.1 other downstream 1971923 202654 ~ 227102 (-) True si:dkeyp-75b4.8
XR_003403632.2 other upstream 321599 2566757 ~ 2574471 (-) False LOC113535702
TU438365 other upstream 598054 2843212 ~ 2853211 (-) True LOC117596167
XR_003403643.2 other upstream 2212277 4457435 ~ 4457541 (-) True LOC113535829
XR_004577365.1 other upstream 2214159 4459317 ~ 4459423 (-) True LOC117596196
XR_004577366.1 other upstream 2216051 4461209 ~ 4461315 (-) True LOC117596197

Expression Profile