Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004577296.1 |
| length | 526 |
| lncRNA type | inter_gene |
| GC content | 0.43 |
| exon number | 3 |
| gene id | LOC117596129 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047620.1 |
| NCBI id | CM018566.1 |
| chromosome length | 19313417 |
| location | 2199025 ~ 2245158 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_004577298.1 | lncRNA | downstream | 56184 | 2186646 ~ 2187942 (-) | False | LOC117596130 |
| XR_004577297.1 | lncRNA | downstream | 56184 | 2186646 ~ 2187942 (-) | True | LOC117596130 |
| XR_004577364.1 | lncRNA | downstream | 99675 | 2115578 ~ 2144451 (-) | True | LOC117596194 |
| TU437914 | lncRNA | downstream | 222811 | 2018715 ~ 2021315 (-) | True | G369663 |
| XR_004577279.1 | lncRNA | upstream | 97955 | 2343113 ~ 2345533 (-) | False | LOC113535806 |
| XR_003403637.2 | lncRNA | upstream | 97955 | 2343113 ~ 2345533 (-) | True | LOC113535806 |
| TU438165 | lncRNA | upstream | 265598 | 2510756 ~ 2510962 (-) | True | G369891 |
| TU438184 | lncRNA | upstream | 275340 | 2520498 ~ 2522127 (-) | True | G369907 |
| TU438207 | lncRNA | upstream | 310821 | 2555979 ~ 2558765 (-) | True | G369924 |
| XM_026929215.2 | mRNA | downstream | 307051 | 1915663 ~ 1937075 (-) | True | klf7a |
| XM_034300370.1 | mRNA | downstream | 334752 | 1895048 ~ 1909374 (-) | False | LOC113535707 |
| XM_034300285.1 | mRNA | upstream | 11263 | 2256421 ~ 2259148 (-) | True | LOC117596168 |
| XM_034300269.1 | mRNA | upstream | 16131 | 2261289 ~ 2271653 (-) | False | LOC113535651 |
| XM_034300270.1 | mRNA | upstream | 16131 | 2261289 ~ 2271643 (-) | False | LOC113535651 |
| XM_034300271.1 | mRNA | upstream | 16131 | 2261289 ~ 2266153 (-) | True | LOC113535651 |
| XM_026929032.2 | mRNA | upstream | 37633 | 2282791 ~ 2331670 (-) | True | LOC113535598 |
| TU437816 | other | downstream | 448902 | 1792187 ~ 1795224 (-) | True | G369586 |
| XR_004577318.1 | other | downstream | 644382 | 1541362 ~ 1599744 (-) | False | nrp2a |
| TU437448 | other | downstream | 967313 | 1276021 ~ 1276813 (-) | True | G369242 |
| TU437316 | other | downstream | 1328443 | 911553 ~ 915683 (-) | True | G369125 |
| XR_004577324.1 | other | downstream | 2017024 | 202654 ~ 227102 (-) | True | si:dkeyp-75b4.8 |
| XR_003403632.2 | other | upstream | 321599 | 2566757 ~ 2574471 (-) | False | LOC113535702 |
| TU438365 | other | upstream | 598054 | 2843212 ~ 2853211 (-) | True | LOC117596167 |
| XR_003403643.2 | other | upstream | 2212277 | 4457435 ~ 4457541 (-) | True | LOC113535829 |
| XR_004577365.1 | other | upstream | 2214159 | 4459317 ~ 4459423 (-) | True | LOC117596196 |
| XR_004577366.1 | other | upstream | 2216051 | 4461209 ~ 4461315 (-) | True | LOC117596197 |
