RNA id: TU480489


Basic Information

Item Value
RNA id TU480489
length 422
RNA type TUCP
GC content 0.45
exon number 1
gene id G404999
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 13140694 ~ 13141115 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTCGATCCTGCTTTGCTGCTTCCCAGAAGTTACTCAATATGAGGTCGAAGACACCATCAGGGGGATGAGATCCTCCACATGTGCCCTCGACCCTTTTCCTACACCTCTGTTGAAAGCAAATATTTCTGCCATCAGTCCCCTTATCACCATGATAATAAACCAATCCCTTCAGACTGGCCATGTACCGTCTGCCTTGAAAACGGCCATAATCAGACCATTACTTAAGAAACCCTCAATTGATCCTCAAATCTTTGCTAACTATAGGCCCATATCCAACCTGCCATTTCTCTCTAAGGTTCTGGAGAAAGTAGTTGCCAGCCACCTTCAAGACCACCtcaaacacaataacatttttgaaaagtttCAGTCTGGTTTCCGTTCCGCTCACAGCACGGAAACAGCCTTAGTGAGAGTCACAAATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU480487 lncRNA downstream 39 13140420 ~ 13140655 (-) True G404997
TU480472 lncRNA downstream 13038 13127399 ~ 13127656 (-) True G404982
TU480449 lncRNA downstream 28053 13112433 ~ 13112641 (-) True G404959
TU480446 lncRNA downstream 33737 13106733 ~ 13106957 (-) True G404956
TU480433 lncRNA downstream 53495 13086961 ~ 13087199 (-) True G404943
TU480522 lncRNA upstream 77164 13218279 ~ 13218480 (-) True G405032
TU480641 lncRNA upstream 225322 13366437 ~ 13366776 (-) True G405144
TU480713 lncRNA upstream 311284 13452399 ~ 13454797 (-) True G405206
TU480772 lncRNA upstream 400888 13542003 ~ 13544405 (-) False rps27.1
XR_003403560.2 lncRNA upstream 418774 13559889 ~ 13563949 (-) True LOC113535067
XM_034301473.1 mRNA downstream 48948 13087487 ~ 13091746 (-) True LOC117596411
XM_034301498.1 mRNA downstream 194317 12937224 ~ 12946377 (-) True crabp2b
XM_034301716.1 mRNA downstream 214430 12915978 ~ 12926264 (-) True scamp3
XM_034301717.1 mRNA downstream 214457 12915978 ~ 12926237 (-) False scamp3
XM_034301790.1 mRNA downstream 240734 12860573 ~ 12899960 (-) False ash1l
XM_026927904.2 mRNA upstream 248801 13389916 ~ 13392833 (-) True dpm3
XM_026927908.2 mRNA upstream 267942 13409057 ~ 13443086 (-) False trim46b
XM_026927906.2 mRNA upstream 267942 13409057 ~ 13443086 (-) True trim46b
XM_034301492.1 mRNA upstream 271853 13412968 ~ 13443086 (-) False trim46b
XM_034301494.1 mRNA upstream 272290 13413405 ~ 13443086 (-) False trim46b
trnav-cac_26 other downstream 561043 12579580 ~ 12579651 (-) True trnav-cac_26
trnav-aac_26 other downstream 561893 12578729 ~ 12578801 (-) True trnav-aac_26
trnav-cac_25 other downstream 563034 12577588 ~ 12577660 (-) True trnav-cac_25
trnav-aac_25 other downstream 563890 12576732 ~ 12576804 (-) True trnav-aac_25
trnav-aac_24 other downstream 565879 12574740 ~ 12574815 (-) True trnav-aac_24
TU480639 other upstream 248849 13389964 ~ 13392735 (-) False dpm3
TU480779 other upstream 415041 13556156 ~ 13558620 (-) False cks1b
TU480964 other upstream 618646 13759761 ~ 13761516 (-) False s100a11
TU480965 other upstream 618646 13759761 ~ 13761555 (-) True s100a11
XR_004577571.1 other upstream 940257 14081372 ~ 14083846 (-) True npy

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000071_04352938_04393125.mRNA True 3637 mRNA 0.46 13 CI01000071 4352058 ~ 4393125 (-)