RNA id: TU480893


Basic Information

Item Value
RNA id TU480893
length 381
lncRNA type sense_over
GC content 0.45
exon number 2
gene id G405353
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 13601027 ~ 13605892 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtttttttaagctGTGCTTGGAGGATTTAACACAACTGACACtgttaaaaatgcacattttgcTGTAACATTTTGTCCTCCTGACTGTGTGATCAGCTTGTTAAAGGCCATAGGGGTTTCTGTATCAAAAATGGAGCTCTAATTACACtacatgaccaaaagtatgtggacacttgactaGCACATACCTGTGGTTCTTCcccacacaattgtatagagtgtctctgtgtgctgtagcattacagtttcccttcactggaactaagaggcccaaacctgttccagcatgacaatgcccctgtgcacaaagcgagctccatgaagacatggtgtgtgaaggttggagtggaagaactcgagtgtcctgcacagagccctgac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003403560.2 lncRNA downstream 37078 13559889 ~ 13563949 (-) True LOC113535067
TU480772 lncRNA downstream 56622 13542003 ~ 13544405 (-) False rps27.1
TU480713 lncRNA downstream 146230 13452399 ~ 13454797 (-) True G405206
TU480641 lncRNA downstream 234251 13366437 ~ 13366776 (-) True G405144
TU480522 lncRNA downstream 382547 13218279 ~ 13218480 (-) True G405032
TU480913 lncRNA upstream 49513 13655405 ~ 13706542 (-) True G405368
TU480934 lncRNA upstream 129644 13735536 ~ 13735748 (-) True G405386
TU480985 lncRNA upstream 202591 13808483 ~ 13814892 (-) True G405419
TU480986 lncRNA upstream 210006 13815898 ~ 13872428 (-) False G405420
TU480987 lncRNA upstream 210006 13815898 ~ 13869755 (-) False G405420
XM_026928604.2 mRNA downstream 1407 13591039 ~ 13599620 (-) True hax1
XM_034301479.1 mRNA downstream 14477 13575684 ~ 13586550 (-) True aqp10b
XM_026928305.2 mRNA downstream 42396 13556158 ~ 13558631 (-) True cks1b
XM_034301730.1 mRNA downstream 51812 13548417 ~ 13549215 (-) True LOC113535306
XM_026928592.2 mRNA downstream 56522 13542035 ~ 13544505 (-) True rps27.1
XM_026928526.2 mRNA upstream 40375 13646267 ~ 13678291 (-) True tuft1b
XM_034301653.1 mRNA upstream 83230 13689122 ~ 13726155 (-) True cgnb
XM_034301670.1 mRNA upstream 123235 13729127 ~ 13734761 (-) True pygo2
XM_026928285.2 mRNA upstream 123235 13729127 ~ 13734755 (-) False pygo2
XM_034301583.1 mRNA upstream 140986 13746878 ~ 13750446 (-) False s100s
TU480779 other downstream 42407 13556156 ~ 13558620 (-) False cks1b
TU480639 other downstream 208292 13389964 ~ 13392735 (-) False dpm3
TU480489 other downstream 459912 13140694 ~ 13141115 (-) True G404999
trnav-cac_26 other downstream 1021376 12579580 ~ 12579651 (-) True trnav-cac_26
trnav-aac_26 other downstream 1022226 12578729 ~ 12578801 (-) True trnav-aac_26
TU480964 other upstream 153869 13759761 ~ 13761516 (-) False s100a11
TU480965 other upstream 153869 13759761 ~ 13761555 (-) True s100a11
XR_004577571.1 other upstream 475480 14081372 ~ 14083846 (-) True npy
TU481171 other upstream 508727 14114619 ~ 14119658 (-) True G405588
trnat-ugu_14 other upstream 937325 14543217 ~ 14543289 (-) True trnat-ugu_14

Expression Profile