RNA id: TU480988


Basic Information

Item Value
RNA id TU480988
length 1635
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G405420
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 13815898 ~ 13872428 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cacgtACGCAGTtgtgcagttatctaatcagccaataatatggcagcagtgcaatgcaaaaaaaatcatgccgatacaggtcaagagtttcagttaatgttcacacatcaaacatcagtatGTGTGATCCCTGTGACATTTtattgtggcatggttgctggtatcagatgggctggtttgagtatttcagaaactgcagatctctggaatttcacacacaacagtctctatagtttatacagaatgctgaaaaaaacaaaaaacatggagCAACATTTGTgtgtggaaacgccttgttgataaagGTCAGACGAAAattggccagattggtttgagctgtgtgcgtgtgtatgtgtgtaatgaatTATGACTAagcagatttgagaattcaaccacgctgtggtataaatatatataaaaatcttcAAAACATACCTGTAAAGCCAACTCACATGACCACGTATAGTCTTTATATACATGAAATACTGTGTTCAAAGAGTGACTGATGCCTGAACATACCGCACCTGACAAATTGACTGAAGGCCTTGTAGTTGGTAAGAGATCTGTAGTCCTCTTCAGTAAAGACATGGTCAATGTCCTCCATGCCCCAGGTATCCAGCAGCTGGGAGGAGGTCTTCGGCTCCTGGAAAAAGTTTTAcagaatatgtttttttttttttttttttttttatAAATAAAGACCATTTCTGTATTAGATTtgaagaaaatgtgtaaatgcataaaatatgaCAAAGGTCTCCTTacaattcatgtttttttttttatattacagttacaCATAAAATCTACTCCCACATCAGTTCCACATcctgcatttttattacttgtaaattaTTATTGCTTTAATTACCATGGCTACCAATGTAGAGACCAGCTAATGTAATAgattataatgcatttttctttaaaagtcaAAAAGACCAACCAAGGTGATAAAGTGGCACctaaaaaaacagcacaaaagaaatcaaacaatattaaaaaaaattgcactaaAATCTCCAAGTCCTAACTGTTAAACACCCACtcaccaaaataaaaacaaaaataatcatacaATACTTGTGTCATTATTAATACGccacaatcattaaaaaaaattcagtttaagtCCTGCAGAGGGCAGAGGTGGTAAGAAACACTTGGAGTTCCAATTGCCTCAAtgaaaaggaatgaaagaaggaaaacaaCTGATTGCTTTAgcatggtctttttttttttttaaagactgctGAGGCTAAACAAAGTCAAAGTGAGGGatgtgaaaaacacatttaagtgGTTGTTTGTTTAAGTAATGGCAGACttgtagaaagaaaaaaaaaaacgccagtCATCCATTTCCATGTTTTGaacgcattttttttttgtgtataggTAGGTCTTGTATAGAAAGACTGGCTATTAGTCAGGAAGAGAGATGTCAGCATATTACCACACAAACCACTCTTAATTTTGTAAAACTAAAGGCACTGTCTGAATGCctcacatttttctccccatCAACTTGTTCCCAAATTTCTTTTATAAGAGAATGCAGCGTTTCTTGGGTTTGGTCTCAGGAGGCTCCAGGGCAGCCAAGATGGCTTCATCAAAGACATTCTTTAATCCTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU480985 lncRNA downstream 1006 13808483 ~ 13814892 (-) True G405419
TU480934 lncRNA downstream 80150 13735536 ~ 13735748 (-) True G405386
TU480913 lncRNA downstream 109356 13655405 ~ 13706542 (-) True G405368
TU480893 lncRNA downstream 210006 13601027 ~ 13605892 (-) True G405353
XR_003403560.2 lncRNA downstream 251949 13559889 ~ 13563949 (-) True LOC113535067
TU481157 lncRNA upstream 236609 14076442 ~ 14077150 (-) True G405575
XR_004577551.1 lncRNA upstream 343653 14183486 ~ 14191755 (-) True LOC117596429
TU481288 lncRNA upstream 416691 14256524 ~ 14329200 (-) True G405681
TU481287 lncRNA upstream 465106 14304939 ~ 14329200 (-) False G405681
TU481309 lncRNA upstream 473906 14313739 ~ 14314834 (-) True G405701
XM_026928451.2 mRNA downstream 11310 13782962 ~ 13804588 (-) True LOC113535216
XM_026928448.2 mRNA downstream 44365 13761655 ~ 13771533 (-) False pbxip1a
XM_026928449.2 mRNA downstream 44365 13761655 ~ 13771533 (-) True pbxip1a
XM_034301496.1 mRNA downstream 44366 13761655 ~ 13771532 (-) False pbxip1a
XM_026927989.2 mRNA downstream 54341 13760165 ~ 13761557 (-) False s100a11
XM_034301581.1 mRNA upstream 86002 13925835 ~ 13999667 (-) False oxnad1
XM_026928261.2 mRNA upstream 129763 13969596 ~ 13999667 (-) True oxnad1
XM_026928260.2 mRNA upstream 134843 13974676 ~ 13999667 (-) False oxnad1
XM_034301580.1 mRNA upstream 137089 13976922 ~ 14000665 (-) False oxnad1
XM_026928262.2 mRNA upstream 137089 13976922 ~ 14000660 (-) False oxnad1
TU480965 other downstream 54343 13759761 ~ 13761555 (-) True s100a11
TU480964 other downstream 54382 13759761 ~ 13761516 (-) False s100a11
TU480779 other downstream 257278 13556156 ~ 13558620 (-) False cks1b
TU480639 other downstream 423163 13389964 ~ 13392735 (-) False dpm3
TU480489 other downstream 674783 13140694 ~ 13141115 (-) True G404999
XR_004577571.1 other upstream 241539 14081372 ~ 14083846 (-) True npy
TU481171 other upstream 274786 14114619 ~ 14119658 (-) True G405588
trnat-ugu_14 other upstream 703384 14543217 ~ 14543289 (-) True trnat-ugu_14
trnat-ugu_15 other upstream 706273 14546106 ~ 14546178 (-) True trnat-ugu_15
TU481617 other upstream 1127643 14967476 ~ 15013988 (-) True G405961

Expression Profile