RNA id: TU481553


Basic Information

Item Value
RNA id TU481553
length 339
lncRNA type read_through
GC content 0.50
exon number 2
gene id G405906
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 14644853 ~ 14966111 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAGATAAAGACATGTATAGTATTGTAGTACTGAACtgtaaaacataattatattgTGCGCTACATGTTCCCacggggcagtcgtggcctaatggatagagagtcggacttgcaacccgaaggtgaacctgaaggttgtgggtttgagtctcgggtctagcagggattgtaggtggggggagtgaatgaccagcgctctctcccaccctcaataccaccactgaggtgagacccctgagcaaggcaccgaacccccaactgctccccagcacttggatgggttaaatgcagagcacaaattccgagtatgggtcaccatacatggccacaagtcacttca

Function

GO: NA

KEGG:

id description
ko05322 Systemic lupus erythematosus
ko05034 Alcoholism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU481349 lncRNA downstream 166214 14475480 ~ 14478639 (-) False tpbga
TU481315 lncRNA downstream 259203 14378892 ~ 14385650 (-) True G405707
TU481288 lncRNA downstream 315653 14256524 ~ 14329200 (-) True G405681
TU481627 lncRNA upstream 52575 15018686 ~ 15019240 (-) True G405967
TU481636 lncRNA upstream 82610 15048721 ~ 15049178 (-) True G405976
TU481641 lncRNA upstream 85578 15051689 ~ 15051897 (-) True G405981
TU481642 lncRNA upstream 85844 15051955 ~ 15052188 (-) True G405982
TU481643 lncRNA upstream 86476 15052587 ~ 15052844 (-) True G405983
XM_034301734.1 mRNA downstream 7520 14622681 ~ 14637333 (-) True ctdp1
XM_026928370.2 mRNA downstream 30092 14598495 ~ 14614761 (-) True zbtb22b
XM_034301474.1 mRNA downstream 58611 14552044 ~ 14586242 (-) True epb41a
XM_026927893.2 mRNA downstream 153590 14481937 ~ 14491263 (-) True tmem222b
XM_026927974.2 mRNA downstream 165776 14475476 ~ 14479077 (-) True tpbga
XM_034301470.1 mRNA upstream 107558 15073669 ~ 15136790 (-) False LOC113534955
XM_034301471.1 mRNA upstream 107558 15073669 ~ 15136752 (-) False LOC113534955
XM_034301469.1 mRNA upstream 107558 15073669 ~ 15136752 (-) True LOC113534955
XM_026927874.2 mRNA upstream 199077 15165188 ~ 15206951 (-) True atp1a3a
trnat-ugu_15 other downstream 98675 14546106 ~ 14546178 (-) True trnat-ugu_15
trnat-ugu_14 other downstream 101564 14543217 ~ 14543289 (-) True trnat-ugu_14
TU481171 other downstream 525195 14114619 ~ 14119658 (-) True G405588
XR_004577571.1 other downstream 561007 14081372 ~ 14083846 (-) True npy
TU480965 other downstream 883298 13759761 ~ 13761555 (-) True s100a11
TU481617 other upstream 1365 14967476 ~ 15013988 (-) True G405961

Expression Profile