RNA id: XM_026928095.2


Basic Information

Item Value
RNA id XM_026928095.2
length 3490
RNA type mRNA
GC content 0.48
exon number 22
gene id tbc1d5
representative False

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 14195955 ~ 14218170 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATCGCACTTCCGGTCTCGTGTCACGTGTGCGAGCAGCTGCTTTGCAGCACTTCCTCCTGACTCGCGCTCctgtgtttacatgcagcctGCAGAATGGGAAGAGCTGCATGAATATTTGCAGATTAACAGACACAGGACAGTGATCTCCACTGTGCTCAGCTCTCTGGCAAGCAGTAGACATGCAGCACCCAAACTTTGAAACGAGACATCCACTGCAGGCAGAAGAGCAGGAAACCGGTTATGACCCTCTGCACAACTATAACCAAAACATAGCCCGAGACGTGCTAAACAGTGCTGCTGAGTCGACCTTTCAGTCATACAGAAAAGAGTGGGATGACTTGTTCCAGAACAGCAACTATCTGGCCCGGATCAGGCAGGCAGGCATTAATGGCCAGTTAAGGAGCAGCCGATTTCGCAGCATATGCTGGAAGCTCTACTTAGAGATCCTGCCTGAGGATAAGAGCCAATGGATCAAAAAGACCAAGGAGCTTCGAGATAAATATGAGCAGATCAAAgagaggCACATCACAAACCCACGCAAAGCTGCAGGCCAGCAGGACCTGGTGGTGAACAACCCACTGTCTCAGGATGAGGGGaGTTTGTGGAACAAGTTCTTCCAGGATAAAGAGTTGCGGGGTATGATCAAGCAGGATGTGCTGAGAACGTTTCCAGAGATGCGTTTTTTCCAAGAGGATGATGTACGGACTAAACTGACGGATATTCTCTTCTGCTACGCACGAGAAAATGAGCAGTTACTCTATAAACAGGGTATGCATGAGTTGTTGGCTCCTATAGTATTTGTTTTGCACTCTGATCATCAGGCATTTCAACATGCCAGTGAGACTGGCAGTCCCAGTGAGGACATGAAGGTGGTGCTGGACCCAAAGTTTCATGAGCATGATGCATATGCCATGTTCTCACAACTCATGGAAACAGCAGAGCCCTGGTTCTCCAGTTTTGAGCGGGAGGTGCGCAAGGGAAAGGAAGAGATGCTCACCAGCATTCCTTTTGCCAGACCCCAGGACGCCGGCCCTTCTGTGGCCATTGTGACCAAAGTAAACCGAATTCAAGACCAGCTGGTAAAAAAGCATGATATCGAACTGCACATGCACCTGAACCGCCTGGAGATCGCACCACAGATATACGGCATtcgCTGGGTCCGCCTGTTATTTGGGAGGGAGTTTCCTCTGCAGGACCTGCTGGTGGTGTGGGACGCACTGCTTGCAGACAGCATCACTCTGGATCTGGTGGATTATGTGTTTGTAGCCATGCTGCTTTACATCAGAGATGCATTGATTGCCAGTAGCTTTCAGACTTGTCTTGGCCTCCTGATGCACTACCCGCCTGTTGGAGACATTCACGCTCTTCTGCACAAAGCGCTGTTCCTGAGAGACCCAAAGAATAATCCAAGGCCAGTCAACTATCAGTTCCAACAGAACCTTGACTACTACAAAAACCAAGGAGCTGACTTTGTCGACAGGTCACGCACTGTTAGCACCAAAGTGGCTCCCCTAAACATCAATAAGGTCTCCAGCTCTCTGCTTAGCTTCGGTAGGAAGCTCATTGCCCCCATCGGTGGTGGCTCCAGTGGTGTCTCTCCAGTCAACAGTGAAGTGCCGTCTTGTCCATCTCCACAACCTCAGCCACCTCGGGCTTTAGCTGAGCAACCATCTAACACTGTGTCGTCTCGTACACAAACGCATGTGGCACAACAGCGGCTGCTGAAGTCTGAGAGCATGCCTGTGCATCTCAGTAAAGGTCAGACTTCCAGGACCGTGAGCTCCTCACCGAGTGTTGAGAGTCTGTCAGGTGGGAGGGACCAGGCTATGTCATCCCCTCCTCTTCCTGCCTCCAAGGGGCGGGAGTCGAGCACATCATCACCGCCTCTCTCGGCCACGAAGAAAGATTTGTTCTTCAACATCAGTCGTTCGCGTTCTCACAGCAAATCCATAGGCAAAAAGGACCTGGAAGAGTTGGAGGCCCAAGTGTCCTTACTGCAGGGGCAGATCAATGATCTGGAGGCCATGAGCAAATATTGTGCCAAGATGATGAATGTACACATCGGCAAGATTCAGGACGTGATACTGCAGGAACATCTGCAGAAAGAGGATGAAGTGCTGGTATCACTTGCTGGACTTAAGCAGATTAAGGACATCTTAAAGGGAGCACTGCGCTTTAATCAAAGTCAGCTGGAGGCTGAGGAGAATGAGGAGATCACAATAGCAGATGATCACTACTGCTCTACAGGTCAGGACACAGCTCAGCAGGGTGGATCCACAACTGTGGCCAATACGGATACTGAAATTGTTCAGCCAAGCCCTCAGCTGGATATCAGCCATCTCTCTGAGCAAGAGAAGGAAGAGGAGACACAAGAAAAGACAACAACTATGCCAAGTGAGGGGGCACATACCACAGAACCACAGATTGCTGAGGGGAGGAACTGGGATGACTACATCCTGGTTTCACAGGATGGGGATCTTCAACCAACGGAGGGCGAGCATGCTGTGCCCTTCAAGCAGGGACGGGGTTTCGGCATGGCAGAGTTTCAGGACCCTCTTATGGGAACCACCTCTGGATCATCCAGCCCAGAAGAGGGCAGCACTAACAGCAAGGACTCTGATTTTACCATTGTTAACTCGGCTGACCTTTGAACCCTAAAATTAATTTAGTCCGTCTGATCTTTATCTTTGAATCCCTCTAAGAGGACAAGACGTTCTGCTGGACTTTTGCACTTGTGAACTTGGGCTGATTGCCTTACAGGATCCTTAGTCCCTTTAAACCCAGACCCCATTTCATCTCCTATCTGTGTTTTCATAGGCCTGTATTCGAAGTAACTGTCTATACACCTGTATCCTGTGACCTACACCTTTTGTTTGCACATTGAATTTAGCTACCTGGTTGCTGTAATTTACCTTAAAACATAAGTAAACCCCATTTATTTGATGAAACCTTATTACCACCCCATACCACTGCATCTAACCCCTCACAGTCCCCTACATGTAGCCTGACTCCTAATAGTAGTCAAATCTTTATCAGTACTCAAacctctcttgctctttctctctgtgtttgcatAATGACTGGGATAAAGAAGAGCGCAGTGGAATACATACACCATGTGTCTTAAGAAAGCCAGAAAGGGGAAATGTAATCGACATGGACTATATCAGTAACCTTTGTAACATTGATTGTTCGTTAACCGGTGCCTCAGTATATGTCTGTTTATATGTCCGTCCTGTTCTTCTgttccaatgttttttttttccctaaataaTTTTAACTCCTAGATTACAGTGTAAGATTTTGCTAAATTatgttttccttcttttttaaatccttgATCTGTGAACTGTATCTTTTTTCTTATGTCTTTTGTTTAAGTTCTTTCAGCCCTTAAGGTAGCTGTATGGCACTGCACGTGTGGGATGTTGGAATGATCTTAACTCCAGAAGAATAAAAAGGCATTATTGCTCTTGCCTAAACTTGTGTA

Function

GO:      GO:0005097,GO:0032313

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577551.1 lncRNA downstream 4200 14183486 ~ 14191755 (-) True LOC117596429
TU481157 lncRNA downstream 118805 14076442 ~ 14077150 (-) True G405575
TU480986 lncRNA downstream 323527 13815898 ~ 13872428 (-) False G405420
TU480987 lncRNA downstream 326200 13815898 ~ 13869755 (-) False G405420
TU480988 lncRNA downstream 356122 13815898 ~ 13839833 (-) True G405420
TU481288 lncRNA upstream 38354 14256524 ~ 14329200 (-) True G405681
TU481287 lncRNA upstream 86769 14304939 ~ 14329200 (-) False G405681
TU481309 lncRNA upstream 95569 14313739 ~ 14314834 (-) True G405701
TU481315 lncRNA upstream 160722 14378892 ~ 14385650 (-) True G405707
TU481349 lncRNA upstream 257310 14475480 ~ 14478639 (-) False tpbga
XM_026928099.2 mRNA downstream 489 14172834 ~ 14195466 (-) True dazl
XM_034301504.1 mRNA downstream 27359 14139944 ~ 14168596 (-) False mpp6b
XM_034301505.1 mRNA downstream 27365 14139944 ~ 14168590 (-) True mpp6b
XM_026928309.2 mRNA downstream 112109 14081372 ~ 14083846 (-) False npy
XM_026928422.2 mRNA downstream 121780 14067317 ~ 14074175 (-) False ccdc126
XM_034301478.1 mRNA upstream 102695 14320865 ~ 14388466 (-) True arid1ab
XM_026928374.2 mRNA upstream 222630 14440800 ~ 14452371 (-) True nudc
XM_026928455.2 mRNA upstream 242222 14460392 ~ 14470818 (-) False kdf1b
XM_026928456.2 mRNA upstream 242222 14460392 ~ 14470712 (-) False kdf1b
XM_026928453.2 mRNA upstream 242222 14460392 ~ 14470712 (-) False kdf1b
TU481171 other downstream 76297 14114619 ~ 14119658 (-) True G405588
XR_004577571.1 other downstream 112109 14081372 ~ 14083846 (-) True npy
TU480965 other downstream 434400 13759761 ~ 13761555 (-) True s100a11
TU480964 other downstream 434439 13759761 ~ 13761516 (-) False s100a11
TU480779 other downstream 637335 13556156 ~ 13558620 (-) False cks1b
trnat-ugu_14 other upstream 325047 14543217 ~ 14543289 (-) True trnat-ugu_14
trnat-ugu_15 other upstream 327936 14546106 ~ 14546178 (-) True trnat-ugu_15
TU481617 other upstream 749306 14967476 ~ 15013988 (-) True G405961

Expression Profile