RNA id: AMCG00000170


Basic Information

Item Value
RNA id AMCG00000170
length 4004
RNA type mRNA
GC content 0.39
exon number 4
gene id AMCG00000170
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 5835486 ~ 5844974 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCACCTTCAGCGACACAGTgaactacaaaatacatatcaatatttaataatatactcAACGTTTACTACCCCGTCAGCATGAACGGAGCGATGCATACCTTGCCCAACGTGCTAGATATCCGCTTGAAAAGAGGACCATCTGGGCTGGGATTCAACATCGTGGGGGGCACAGATCAGCAGTATATGCACAATGACAGCAGCATCTACGTGTCTCGAATCAAGGAGAATGGGGCGGCAGCGCTGGATGGGCGGCTACGGGAGGGCGACAAGATCTTGGAGGTAATCAGCTTGAGGTCAAGGGTGGGTAAGAACAAGATTAATGGCAACAAGCTGGAGAACCTGGGTCATCACCAGGCTGTGGAGCTCTTCAGAACAGCAGGGGAGGACGTGGAGCTCCGCGTGCAACAGAGGCCTCCAACACAGAATGGCCCTGTGGGAACTGGGTCGGACAGTGAGCCCTCCGTACCCCTGGCATTGATTGGCATTGTAGCAGTGGCAGCAATCACATTTGCCTTCATCTACATTCGCTACCATTCCCAGAGCAGAAgacacttttaattttttttgccctttttttttttaatttaattttttttaatttaattttttttctttaaactgggactgatttgttttcttagggccaaaaagaaaaaaaacaaaagccacattttattttattgtgaatattatcatttttattattgttattattatgatgatgattttgttATCAGTACGCTGAATACCCGAATGCACAGGGGGAGGCTGGGTAGTGGTGTTTCAAAAGGGGGCCATGACACAGACTGGGGATTAGAGGGACAAGAGGCTTTGAAAGTGTTTTACTAGGCCTCAGTGTTCTCTCCAGCTTTCCTTTTGCTTTCCAGATTTGTCCTGGAATACAGAAGCGTCGATTCGATTCCCATTGTCTCGCTTCGTTTAGGGATAGTGTTGAACCACAGGGAAAATCTCTTCCAGTTTTGAGAATCCTGCATCCCCCTGGTCCTCAATCGGGATTTTCATTTGGTTAGTTAAGAGTGCACTCAATCCTAAAGCGCTCTTATATtaatgctttgcttttgttttagttttttttcctttactggGACCATTCTAGTAGAGTAGTAAAGTATTGCCTATTGGCTATACACATTTATGAAGGGGGTTATCAtgatacatatattatacaaaCCGTACATAATGAAGCATTTGGCATGTATAAGTAGGTGCCTCTCAATACATGTTTCTCAACACCTCAGTCACTTGAATCATGTtccaacaaataaaaactgacgGCAGAATGCACCCAGCATTTTTCTGCCAAGTTATTTCCGCttcaactttttgttttttgtttgtttttccctaaATGAGAACCTAATTCATCTTGGAAATGCACACCAGTAAATGACACCCGTTTCATGGTTAAGGCTATTTGGTATTTGGGTTTGCCAAAGGGGATCATTTTAGTTCAGATTAaaccatgttgttgttttttgttggggTCAGGGACGCAGATAAATATCCTGATAATATTCTATTCTCAAATCTTGTTGAGGTTTTTACAGCATCAGTCTACAACTATCTCCAGGCAGACGGAGACTGTGTTACTCTGAAGGGAAGTCTTTTAGTTAGGCTGAGGCCTATAAATGTCAAAAATAGCTTCAGCTTTAGAAAAAGGGCAGCAACTGCTTATGTCAAAATGCCAATGGAGTCAAAACAATGCATCTCTCCATTGTACACTGCCATCTACTGGGAAGCTTTCATTAATACACCTCCCTGTGCAGTGTTAGTCCTCCTACTGTCAATGTACTGATAGTACACCTGAAGTCATGATCACTCAAGTGGTTTTATTCTCATTGCTTTTGACTGTAtccatttatattgtttttttgagTACTCCTGTTTTGGAATTGGGTCTTTGGAAACTGCTGTGCAGAGTAATTTAGAAatgaaagtgtaatttaataCACACAAGCTCTGTGCAAACAAATCTTCCATTTAAAGTGTAATGTTTAAGTCACTATTATCCTTGCAATTGAGATGTAGCCTTCAGtgatttttgtaatgatttattcCCTGGTGGATTAATcatgtttttgtggtttgttcttttttaaatgtttgttagtTTAAACTTCAGGTAAGTAAAGCCACATTTCTAATTGTGTGCACACTTTCAGATAAACGATTCTTGGAGTAGAATAAAGGCAGATAATCATAACTTTCATTGTTAAATGTGATCCTGAACTATGACATGTACAGTCTTCTTAGATTGTGGGCTTTATCAAAAAGTTCTACATGTGCTTGGCATTTTAACTTGCAAAATgggtttatttgatttgtatgtGATGTTGTACAGAGAAAATATAACCGCACAAAACGCAAACCTACACAAAGAAGTATGACTTTGATTAAATGTTATAGAAAATTACAAAGTCACTTTGAGAGATTGTTACACGGCCTCTGCAATAGCTATTTCGCTTCTCAGTGTGGCCATCAATACTTGCACTTGCACCAATTGTAGTTGACATCCAGCACTATATCACTGACCGATGGATTATAATGGTTAGGTGGAGGTCTAAATTACAGGAGGCATACTTCTAAATATCACATTGGCTACCTTTGGGAAAACACTGGGCTAAATTCTTCATTTGTTCTGTGGTGCACAACCCAGAGTTAATATGTGTTTAATTCAAACtccattttaaatcatttggaGGATTTTGGGTAGCATTTGTGAGGAGTTTGGGAAGAGTTCACATCTCCCACGTTGCATCAGGATTGGTTTAATCGCGTGTCGGAGGGCAATGAGTGGGGGCAACTAAACCCTACTGAAtctgttaaatatgtatatgttactGATGTTTTTCAGCATCTGAACAAACTGAAAAGCATTAAAGTGTGGTGATAAAAAGCAGCTCCCAGGCTTATTTGCAAAAGTCAACTGTGAATTGTAGCAGATGCACTTGAAATTGAGACACTCAAGCAAACGCATTCAGATTCTTGAAGGaaaatctacacacacacacacacacacacacacacacacaggtatcCACCTCATGGGGCCATTTTGGAAGAAACACTCAAAGGAAATTATGAATCACAGGAATCCCTGTCCTTTATAATGTTAACAATgttaacataaaatatgttGGAAAACTGCATTATTTAAGAAGTAGTTCTTGAGAATTTAATAGGTGACACAGGTTGTGGTTGAAGTGGGCAAGGGAGAATTTCTgctggtttatttaatttattaatcattGTGAGGCCAATGAATCACTTCCCATAATAGTGTCTTTAAAACTAGTGGAACGAAATTTATGTGATTTTGCACACCCTTTCAACCCTGGAAATATACTGATGAGAGAACGGTGACATCAGTCATCCTCATGGTTACCTTGATCATTAGATCATTTGTGGAGCCAGTTGGAAGAAAAGGCCATGCAGTGCCATAGATGAGTGACACATTGTAGAACAGTAGTGGTAGTGAAAAAGGGACTGATTGAAACTGTGTTGAAGGAGAGAACCTGAGAGTGAGGGAGCAAGAATGGATTGCAGATTGTCGGAGCTTTTGTGATTGAGGAGgagaaagtaaagtaaagtaaatgttTGCTCTGGGGCAGTGATAGAAGCTTGCATTAATGGAGAAAAGGTGAATGCAGAGTAATTTTAAAGGTGAGAACGATGGCCATCAATCTGAGAGCGTGCAATATCTATCAAAGGAGCTTCAgactttttttgtaaatgtaatgacAGTACTGGATAAGTTaaccacaaaaaatgaaattgtgtcTACCCACATCTGCACGTCTGTATGTCAGTTTGTGTTTCCTGTTTCATATCTGCATTGTTCAAAATCCTTAAGGAACTCCTGTCAATATTTGCAAACATATTAATACaatcaacaataaaacaatgaatgtattttgaaacatggTTTTTGCCAACTCTTTCAAAGCATGCGGTAACTTCAATGGATAGTTATTACGTTTCTC

Function

GO: NA

KEGG:

id description
K20057 SYNJ2BP, OMP25; synaptojanin-2-binding protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU186834 lncRNA upstream 116005 5715593 ~ 5719481 (+) True G148468
TU186824 lncRNA upstream 156866 5677983 ~ 5678620 (+) True G148459
TU186817 lncRNA upstream 291008 5540679 ~ 5544478 (+) True G148452
TU186759 lncRNA upstream 446672 5382568 ~ 5388814 (+) True G148402
TU186749 lncRNA upstream 481301 5353951 ~ 5354185 (+) True G148396
TU186893 lncRNA downstream 6671 5851645 ~ 6045324 (+) True G148519
TU186924 lncRNA downstream 159217 6004191 ~ 6011397 (+) True AMCG00000175
TU186930 lncRNA downstream 173069 6018043 ~ 6029777 (+) True G148545
TU187001 lncRNA downstream 302948 6147922 ~ 6148285 (+) True G148609
TU187010 lncRNA downstream 362379 6207353 ~ 6214760 (+) True G148618
AMCG00000155 mRNA upstream 299890 5532610 ~ 5535596 (+) True AMCG00000155
AMCG00000143 mRNA upstream 364973 5463949 ~ 5470513 (+) True AMCG00000143
AMCG00000142 mRNA upstream 381280 5435525 ~ 5454206 (+) True AMCG00000142
AMCG00000141 mRNA upstream 439713 5390325 ~ 5395773 (+) True AMCG00000141
AMCG00000147 mRNA upstream 455327 5375615 ~ 5380159 (+) True AMCG00000147
AMCG00000164 mRNA downstream 25264 5870238 ~ 5874652 (+) True AMCG00000164
AMCG00000166 mRNA downstream 36085 5881059 ~ 5887979 (+) False AMCG00000166
AMCG00000165 mRNA downstream 94491 5939465 ~ 5967106 (+) True AMCG00000165
AMCG00000173 mRNA downstream 139585 5984559 ~ 5993668 (+) True AMCG00000173
AMCG00000175 mRNA downstream 155937 6000911 ~ 6005360 (+) False AMCG00000175
TU186772 other upstream 399724 5435158 ~ 5435762 (+) False AMCG00000142
TU186262 other upstream 2074862 3760179 ~ 3760624 (+) True G148040
TU186257 other upstream 2111170 3720985 ~ 3724316 (+) True AMCG00000093
TU186234 other upstream 2139684 3693109 ~ 3695802 (+) False AMCG00000094
TU185878 other upstream 3431514 2403730 ~ 2403972 (+) True G147726
TU186901 other downstream 36049 5881023 ~ 5888027 (+) True AMCG00000166
TU187068 other downstream 626457 6471431 ~ 6474232 (+) True AMCG00000201
TU187079 other downstream 671533 6516507 ~ 6520822 (+) False AMCG00000198
TU187266 other downstream 1445692 7290666 ~ 7296664 (+) False AMCG00000216
TU187267 other downstream 1445692 7290666 ~ 7296664 (+) True AMCG00000216

Expression Profile