RNA id: AMCG00000204



Basic Information


Item Value
RNA id AMCG00000204
length 1116
RNA type mRNA
GC content 0.59
exon number 3
gene id AMCG00000204
representative True

Chromosome Information


Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 6595323 ~ 6597169 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGCGACATTGAACCCCGTAGGTGCCACAATGATTCAAGATTCAATGGACCAGGGTTCAGGAGTCTGGACTCGTCCAACCTGCGTGCAGAGACAGATTCTGGCTTGGCTTCAGAGCTGTGGATCTGATGGGCTCTCTGAGTTCTCCAGCACCCATTCCTCTGTCAGCAGCGCCCCTCGTTCTGCCAGCCCCCTGCACACACCTATCTTTGACTCCAGCAGCCCACCTCACCTCGACCCACAGATGGCTGGGGAGCAGGCACTCGTCTCTCAGAGAGGAGgacgagaggagcccattgtAGAGGATGGTGATGCACTCACCGGTTCATCCATTGATGCAGACGAATGTGAGCGCTCAGAGGTCAGCGCCCTGTGCTCCATGGGGAGTGAGGACACCAAATCCAGTGTCCAGGTTGCCTCAGTCAGCAGTGTGGCGCCAGTGGTGAATAGCAGTGCTTTTCACCTGGATGCTGTCTTTGTAGAGGCTAACTCAGTCACAGAGAGTGTGGGCAGTGAGCTGCAGTACAAGTGTGCCGGCTGCCTGCAGTATCACCAGAGTGTGGCCTCCCTGCAGGCCCATCTGACACAGGGCTGGAGAGAGGGCTACAGCTGTGGGGTTTTCTACCGCACACTGCTCTCAATGCACCAGAGGAGAGGCCAGCAGCACAGGGAGCCGAGTCCCCAGGGCTCCAGGGCTCCCAGCAGCTCCCAGGCTGGAATCCACACAGCACAGGGCAGAGCTGGCCGGAAGTGCAGGGCAGAAGAGCAGGAGTCCCTCTGCCCTGACTACGCCCAGCAACAGAGCCCACACTGTGGACCTGCAGAGCTCCCGGCCGCCAGCCAGAATGAGAGCGGGCTCAGCGATGCCGGCTCCTCGGTCAGCAGTGTGGGGCTGCTGGTGAATAGCACTGCTCCTCACCTGCATGCTGCCTTTGTGAAGGCCATATCAGTCAAAGAGAGGGTGGGCAATGAGCGGCAGTACAAGTGTGCCGGCTGCCTGCGGTACCACCAGAGTCTGGCCTCCCTGCAGGACCATCTGGGGCAGGGCTTGATAGAGGGCTACAGCTGCGGGGTGAGTGGTCCATCAACAGAGTGTGAAAATGTTGTCTTCAAATAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU187052 lncRNA upstream 288456 6306628 ~ 6306867 (+) True G148656
TU187025 lncRNA upstream 378864 6215756 ~ 6216459 (+) True G148631
TU187010 lncRNA upstream 380563 6207353 ~ 6214760 (+) True G148618
TU187011 lncRNA upstream 380563 6207353 ~ 6214760 (+) False G148618
TU187001 lncRNA upstream 447038 6147922 ~ 6148285 (+) True G148609
TU187198 lncRNA downstream 326125 6923294 ~ 6927254 (+) True G148764
TU187204 lncRNA downstream 336131 6933300 ~ 6935160 (+) True G148768
TU187229 lncRNA downstream 494856 7092025 ~ 7092460 (+) True G148791
TU187283 lncRNA downstream 716738 7313907 ~ 7324451 (+) True AMCG00000215
TU187384 lncRNA downstream 1086709 7683878 ~ 7684097 (+) True G148919
AMCG00000203 mRNA upstream 4183 6590583 ~ 6591140 (+) True AMCG00000203
AMCG00000199 mRNA upstream 7396 6576279 ~ 6587927 (+) True AMCG00000199
AMCG00000200 mRNA upstream 20558 6564351 ~ 6574765 (+) True AMCG00000200
AMCG00000202 mRNA upstream 32503 6557842 ~ 6562820 (+) True AMCG00000202
AMCG00000198 mRNA upstream 74460 6500893 ~ 6520863 (+) True AMCG00000198
AMCG00000209 mRNA downstream 139064 6736233 ~ 6770586 (+) True AMCG00000209
AMCG00000208 mRNA downstream 185195 6782364 ~ 6857226 (+) True AMCG00000208
AMCG00000196 mRNA downstream 318578 6915747 ~ 6916898 (+) True AMCG00000196
AMCG00000195 mRNA downstream 344448 6941617 ~ 6946263 (+) True AMCG00000195
AMCG00000197 mRNA downstream 360265 6957434 ~ 6961282 (+) True AMCG00000197
TU187079 other upstream 74501 6516507 ~ 6520822 (+) False AMCG00000198
TU187068 other upstream 121091 6471431 ~ 6474232 (+) True AMCG00000201
TU186901 other upstream 707296 5881023 ~ 5888027 (+) True AMCG00000166
TU186772 other upstream 1159561 5435158 ~ 5435762 (+) False AMCG00000142
TU186262 other upstream 2834699 3760179 ~ 3760624 (+) True G148040
TU187266 other downstream 693497 7290666 ~ 7296664 (+) False AMCG00000216
TU187267 other downstream 693497 7290666 ~ 7296664 (+) True AMCG00000216
TU187271 other downstream 693497 7290666 ~ 7296664 (+) False AMCG00000216
TU187300 other downstream 762109 7359278 ~ 7362707 (+) False AMCG00000217
TU187301 other downstream 763851 7361020 ~ 7362707 (+) True AMCG00000217

Expression Profile