RNA id: AMCG00000209


Basic Information

Item Value
RNA id AMCG00000209
length 2085
RNA type mRNA
GC content 0.52
exon number 15
gene id AMCG00000209
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 6736233 ~ 6770586 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTCTCTATTGTTTCTCGCAGGATGATGAAGTGGTTCTCCAATGTGTTGCCAACATCCAGAAAGAGCATCGGAAGTTCTGCCTGACAGCTGAGGGACTCGGAAATCGACTGTGCTACTTAGAGCCAACGTCAGAGGCCAAGTATGTTCCTCCAGACCTGTGTATCTGTAACTTCGTGCTGGAGCAGTCCCTCTCTGTACGGGCCCTTCAGGAGATGCTGGCCAACACTGGGGAGAACGCAAGTGAAGGAtatttaaccTGTCTGACTTCATCACGGTCCGTGACAGACAAGCTTTCTTTTGATGTGGGACTGCAAGAGAATGCAACAGGTAAACACAAACAAGATCCAAAGAAATACTTTGACTCTGTCCTGTTTTCCTCAGGGTTCTTGCTTGGCGGTCACGTGATGCGTCTCTTTCACGGACATGATGAGAGTCTGACCATCCCGGCCTCCGACCAGAGCGACGACCAGCGCAAGGTAGTGAACTACGAGACTGGCGGAGCTGGCGCACGAGCGCGGTCACTGTGGAGGCTTGAACCACTGCGAATCAGCTGGAGTGGGAGTCACATTCGCTGGGGTCAGCCCTTTCGCCTTCGACACCTCACGACCGGACACTACCTGGCCTTGACAGAAGACCGTGGCCTCGTGCTTCAAGATCGAGAGAAGTCAGACACGAAGTCCACTGCCTTCTGTTTTAGAGTGTCAAAGGAAAAGCTGGAATCCAGCCCAAAGCGTGATATTGAAGGCATGGGGGTGGCTGAAATTAAGTATGGAGATTCAATTTGCTTCGTCATGCATGTAGCCAGTGGACTGTGGCTGTCCTACCAAGCGCCTGACGGGAAATCTGCTCGGCTTGGGCCTCTTAAAAGAAGGGCTATACTTCACCAAGAAGGGCACATGGACGATGGCCTGATCTTACAGCGCTGCCAGCACGAGGAATCCAGAGCGGCTCGCATCATCCGCAATACATCCAAGCTTTTCAGTCAGTTTATCAGAGACCTGGACAGTCTGAGTGGAAAGAACAGAACATCTGTGGCCCTGCCTATTGAGGAGGTCCTGCAGACCCTGAATGACCTCATCACCTATTTCCAGCCTCCGGAGGAAGAGTTGGAGCACGAGGAGAAACAGAACAAGCTGCGCTCCCTGAAGAAACGTCAAAATCTGTTCAAAGAAGAGgGGATGCTGAATTTGGTTTTAAACTGCATCGACCGCCTCAACGTCTATAACAGCGCTGCCCACTTTGGAGAGTATGCAGGAGAGGAGGCTGGGAGTGCTTGGAAAGATATATTGAACCTGCTCTATGAACTACTTGCTGCCCTGATCCGTGGAAACCGAAATAACTGCACTCAGTTCTCCAATAACCTGGACTGGCTTGTCAGCAAACTGGACAGACTGGAGTCCTCATCAGGTAATCAGATCTGTTCAGTGGGCCCAGAAGCCCTGAACATCATACAAAAAGGACATATCAAGTCAATCATCTCCTTGCTGGATAAACACGGACGCAATCAAAAGattttagatgTGCTGTGCTCCCTGTGTGTCTGCAATGGAGTGGCTGTGAGAGCCAACCAGAACCTCATCAGCGACCATCTGCTTCCCAGAAGAGACCTTCTCCTCCAAACCCGCTTAGTTAATGATGTCCAAAGtaTGAGGCCAAATATTTTCCTGGGAGTCAGTGAAGGTTCTGCCCAGTACAAGAAGTGGTATTACGAGCTGATGATTGACCAGGTGGACCACTTTGTGACCTGTGAGCCTTCTCACTTGCGTGTCGGTTGGGCCACCACGAAGGGGTATGCCCCCTACCCAGGAGGCGGAGAGGGCTGGGGTGGCAACGGTGTGGGGGATGACCTGTACTCTTACGGCTTTGATGGGCTTCACCTGTGGTCAGGGCGCATTCCCCGAGCTGTGGCCTCGATCAATCAGCATCTGCTGACCTCAGATGATGTGGTCAGTTGCTGTCTGGACCTGGGTGTCCCCAGCATCTCGTTCAGGATCAACGGGCAGCCGGTGCAGGGCATGTTTGAGAACTTCAACACCGACGGTCTCTTCTTCCCAGTGGTCAGCTTCTCGGCTGGAGTCAAGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187052 lncRNA upstream 429366 6306628 ~ 6306867 (+) True G148656
TU187025 lncRNA upstream 519774 6215756 ~ 6216459 (+) True G148631
TU187010 lncRNA upstream 521473 6207353 ~ 6214760 (+) True G148618
TU187011 lncRNA upstream 521473 6207353 ~ 6214760 (+) False G148618
TU187001 lncRNA upstream 587948 6147922 ~ 6148285 (+) True G148609
TU187198 lncRNA downstream 152708 6923294 ~ 6927254 (+) True G148764
TU187204 lncRNA downstream 162714 6933300 ~ 6935160 (+) True G148768
TU187229 lncRNA downstream 321439 7092025 ~ 7092460 (+) True G148791
TU187283 lncRNA downstream 543321 7313907 ~ 7324451 (+) True AMCG00000215
TU187384 lncRNA downstream 913292 7683878 ~ 7684097 (+) True G148919
AMCG00000204 mRNA upstream 139064 6595323 ~ 6597169 (+) True AMCG00000204
AMCG00000203 mRNA upstream 145093 6590583 ~ 6591140 (+) True AMCG00000203
AMCG00000199 mRNA upstream 148306 6576279 ~ 6587927 (+) True AMCG00000199
AMCG00000200 mRNA upstream 161468 6564351 ~ 6574765 (+) True AMCG00000200
AMCG00000202 mRNA upstream 173413 6557842 ~ 6562820 (+) True AMCG00000202
AMCG00000208 mRNA downstream 11778 6782364 ~ 6857226 (+) True AMCG00000208
AMCG00000196 mRNA downstream 145161 6915747 ~ 6916898 (+) True AMCG00000196
AMCG00000195 mRNA downstream 171031 6941617 ~ 6946263 (+) True AMCG00000195
AMCG00000197 mRNA downstream 186848 6957434 ~ 6961282 (+) True AMCG00000197
AMCG00000227 mRNA downstream 356979 7127565 ~ 7138577 (+) True AMCG00000227
TU187079 other upstream 215411 6516507 ~ 6520822 (+) False AMCG00000198
TU187068 other upstream 262001 6471431 ~ 6474232 (+) True AMCG00000201
TU186901 other upstream 848206 5881023 ~ 5888027 (+) True AMCG00000166
TU186772 other upstream 1300471 5435158 ~ 5435762 (+) False AMCG00000142
TU186262 other upstream 2975609 3760179 ~ 3760624 (+) True G148040
TU187266 other downstream 520080 7290666 ~ 7296664 (+) False AMCG00000216
TU187267 other downstream 520080 7290666 ~ 7296664 (+) True AMCG00000216
TU187271 other downstream 520080 7290666 ~ 7296664 (+) False AMCG00000216
TU187300 other downstream 588692 7359278 ~ 7362707 (+) False AMCG00000217
TU187301 other downstream 590434 7361020 ~ 7362707 (+) True AMCG00000217

Expression Profile