RNA id: AMCG00000245



Basic Information


Item Value
RNA id AMCG00000245
length 717
RNA type mRNA
GC content 0.52
exon number 3
gene id AMCG00000245
representative True

Chromosome Information


Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 8473574 ~ 8483697 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GTCGGCGAGACTGTGTTTTGTGCAGGTCAGATCGGCCTGGTCCCCTGTACGATGAAGCTTGTGGAAGGAGGAGCCCAGATTGAAGCCTCACTCTCCGTCGGCCATGTTGAGAAAGTGTTGGATGCCATGAGCAGTGGTCTGACGCTGAGCCATGTTCTCCTGGCACACTGCTACGTCACATCCAAGATGGCCGTATCTCTTGTCCGGAAACTGTGGGAAAGCAGGTTGAAAGATCAGTGCGGAGAGGATGAAGTGTATGGCGAAGAAGACCAAAAGAGTGGACCTTTGGTGGTATCTGTTATTCCCCGTCTGCCCAGAGATGCCGCTGTGGAGTTCCACGTCATCGCTGTCACCGATGATCCCAGGCATAGGAAATCCTTTTATATCACCAAAGATGTAGCACCTGGCATCATAGAGTGTGAAGTTGTAGAAGCCAGTTCTTCGTCTTCAGCCACCATCTCCCTGTCACTGAgcttgcctctctctccctgcgcCACGATCCAGGAAGAGACGGTTCAAAGTCTCGTCTGTACCTTCCAAGAAAGCCTGGAAAAGCTGGACAGCAACACCTCTCCCTTGTGTTTCAGAGCTTTCTATAAGCACAGCCGCAGTGACGCTGCACAGCTTGTGGCTGGTAAATCTCAcccatctctcactctcttcccTAACATTCTCTTCTTTATGTGGTGCGGTGCCATTCTCATGGTGAATGGCTAG

Function


GO: NA

KEGG:

id description
ko00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
ko03008 Ribosome biogenesis in eukaryotes

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU187484 lncRNA upstream 517185 7955972 ~ 7956389 (+) True G149001
TU187435 lncRNA upstream 713977 7759369 ~ 7759597 (+) True G148961
TU187384 lncRNA upstream 789477 7683878 ~ 7684097 (+) True G148919
TU187283 lncRNA upstream 1149123 7313907 ~ 7324451 (+) True AMCG00000215
TU187229 lncRNA upstream 1381114 7092025 ~ 7092460 (+) True G148791
TU187549 lncRNA downstream 89239 8572936 ~ 8575124 (+) True AMCG00000251
TU187552 lncRNA downstream 99951 8583648 ~ 8584007 (+) True G149055
TU187553 lncRNA downstream 100791 8584488 ~ 8584967 (+) True G149056
TU187556 lncRNA downstream 185283 8668980 ~ 8673786 (+) True G149059
TU187686 lncRNA downstream 529674 9013371 ~ 9016151 (+) True G149172
AMCG00000248 mRNA upstream 16286 8442303 ~ 8457288 (+) True AMCG00000248
AMCG00000247 mRNA upstream 46938 8424584 ~ 8426636 (+) True AMCG00000247
AMCG00000232 mRNA upstream 353469 8108618 ~ 8120105 (+) True AMCG00000232
AMCG00000238 mRNA upstream 587130 7871530 ~ 7886444 (+) True AMCG00000238
AMCG00000221 mRNA upstream 732767 7702819 ~ 7740807 (+) True AMCG00000221
AMCG00000250 mRNA downstream 36167 8519864 ~ 8525224 (+) True AMCG00000250
AMCG00000246 mRNA downstream 43741 8527438 ~ 8550859 (+) True AMCG00000246
AMCG00000244 mRNA downstream 83770 8567467 ~ 8569670 (+) True AMCG00000244
AMCG00000251 mRNA downstream 89323 8573020 ~ 8574704 (+) False AMCG00000251
AMCG00000249 mRNA downstream 96829 8580526 ~ 8585273 (+) True AMCG00000249
TU187300 other upstream 1110867 7359278 ~ 7362707 (+) False AMCG00000217
TU187301 other upstream 1110867 7361020 ~ 7362707 (+) True AMCG00000217
TU187266 other upstream 1176910 7290666 ~ 7296664 (+) False AMCG00000216
TU187550 other downstream 96020 8579717 ~ 8581112 (+) False AMCG00000249
TU188032 other downstream 1485627 9969324 ~ 9970801 (+) True G149424
TU188165 other downstream 2050893 10534590 ~ 10535137 (+) True G149525
TU188404 other downstream 3498763 11982460 ~ 11985715 (+) False AMCG00000352
TU188603 other downstream 4195973 12679670 ~ 12727903 (+) True G149859

Expression Profile