RNA id: AMCG00000249


Basic Information

Item Value
RNA id AMCG00000249
length 541
RNA type mRNA
GC content 0.53
exon number 4
gene id AMCG00000249
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 8579717 ~ 8585273 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttttttttttttttttttaatcaggccTGTTCATACTGTCTTTTCTTTCGATCTCCCTTCCAGATCCATCTCTGTCACCATGTGCGACGACGAGGAGACCACTGCTCTGGTGTGTGACAATGGCTCTGGCCTGGTCAAGGCTGGCTTTGCCGGAGATGATGCCCCCCGCGCTGTCTTCCCCTCTATTGTCGGTCGCCCCCGTCACCAGGGTGTCATGGTCGGTATGGGTCAGAAAGATTCCTACGTGGGAGATGAGGCACAGAGCAAGAGGGGTATGGAATCTGCTGGTATTCACGAAACTACCTACAACAGCATCATGAAGTGCGACATTGACATCCGTAAGGATCTGTATGCCAACAACGTCCTGTCCGGCGGCACCACTATGTACCCCGGTATTGCTGACCGCATGCAGAAGGAGATCACCGCCCTGGCCCCCAGCACCATGAAGATCAAGGGGTTTCTGAGGAACAGGGACACAGGACAGACCAGGGCTGTGTCTGCCATAGCTGGCCACAGCAACAACAAGCTAGCCGATATGGTG

Function

GO:

id name namespace
GO:0045471 response to ethanol biological_process
GO:0055003 cardiac myofibril assembly biological_process
GO:0055008 cardiac muscle tissue morphogenesis biological_process
GO:0043066 negative regulation of apoptotic process biological_process
GO:0042493 response to drug biological_process
GO:0030240 skeletal muscle thin filament assembly biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0030049 muscle filament sliding biological_process
GO:0060048 cardiac muscle contraction biological_process
GO:0005829 cytosol cellular_component
GO:0070062 extracellular exosome cellular_component
GO:0031674 I band cellular_component
GO:0042643 obsolete actomyosin, actin portion cellular_component
GO:0017022 myosin binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187549 lncRNA upstream 5402 8572936 ~ 8575124 (+) True AMCG00000251
TU187484 lncRNA upstream 624137 7955972 ~ 7956389 (+) True G149001
TU187435 lncRNA upstream 820929 7759369 ~ 7759597 (+) True G148961
TU187384 lncRNA upstream 896429 7683878 ~ 7684097 (+) True G148919
TU187283 lncRNA upstream 1256075 7313907 ~ 7324451 (+) True AMCG00000215
TU187556 lncRNA downstream 83707 8668980 ~ 8673786 (+) True G149059
TU187686 lncRNA downstream 428098 9013371 ~ 9016151 (+) True G149172
TU187785 lncRNA downstream 694790 9280063 ~ 9285151 (+) True G149253
TU187853 lncRNA downstream 898086 9483359 ~ 9486681 (+) False AMCG00000285
TU187903 lncRNA downstream 929549 9514822 ~ 9515600 (+) False AMCG00000286
AMCG00000251 mRNA upstream 5822 8573020 ~ 8574704 (+) False AMCG00000251
AMCG00000244 mRNA upstream 10856 8567467 ~ 8569670 (+) True AMCG00000244
AMCG00000246 mRNA upstream 29667 8527438 ~ 8550859 (+) True AMCG00000246
AMCG00000250 mRNA upstream 55302 8519864 ~ 8525224 (+) True AMCG00000250
AMCG00000245 mRNA upstream 96829 8473574 ~ 8483697 (+) True AMCG00000245
AMCG00000252 mRNA downstream 631 8585904 ~ 8587355 (+) True AMCG00000252
AMCG00000256 mRNA downstream 317634 8902907 ~ 8906396 (+) True AMCG00000256
AMCG00000255 mRNA downstream 339124 8924397 ~ 8945589 (+) True AMCG00000255
AMCG00000258 mRNA downstream 411859 8997132 ~ 9004514 (+) True AMCG00000258
AMCG00000259 mRNA downstream 433389 9018662 ~ 9024727 (+) True AMCG00000259
TU187300 other upstream 1217819 7359278 ~ 7362707 (+) False AMCG00000217
TU187301 other upstream 1217819 7361020 ~ 7362707 (+) True AMCG00000217
TU187266 other upstream 1283862 7290666 ~ 7296664 (+) False AMCG00000216
TU188032 other downstream 1384051 9969324 ~ 9970801 (+) True G149424
TU188165 other downstream 1949317 10534590 ~ 10535137 (+) True G149525
TU188404 other downstream 3397187 11982460 ~ 11985715 (+) False AMCG00000352
TU188603 other downstream 4094397 12679670 ~ 12727903 (+) True G149859
TU188861 other downstream 5105566 13690839 ~ 13692589 (+) True G150069

Expression Profile