RNA id: AMCG00000250


Basic Information

Item Value
RNA id AMCG00000250
length 5109
RNA type mRNA
GC content 0.45
exon number 2
gene id AMCG00000250
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 8519864 ~ 8525224 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAACAGTGGTTTTGAAACTTATCACCCAAATGTAGAATCGTCTGTACCCACCACTGGTGCAGATTTTGCAGGATCTGGTTTTGACAACTGCATTAAAACTGAAGGGGAGCAGCGACACAGAGAGAATGCTAAAGGCACTGCAATGAAGCATCAGTGCACGGTTTGCTTCAAGTGGTTTAAATTTGCCTCAAAACTCGAGCGTCATTATCTCATCCACACTGGACAAAAGCCTTTTACGTGTTTAGTGTGTGGGAGAGCATTCAGGCAGTCCATCCATTTAAAGAAGCACCAAGAAACCCATAAGAAATGGAGCCCTTTCAAAGACAGCTTTCAGCAATTGGATTTTACAGATGGAGGTGAATTTATTGAGTCTACGCCACATGAAAGGATCCAGGAGGATTCTCACTGTGGCATTGCAAATGACAGCCCTTTGCCAGCATGCACGGTCTCTCAAGAAGACGAACAAAATCAGTCGGAGCATCCTAATGTTAATGCCCTCAATACAAAGGTGACTGAGCCAGTCCAGTGGATTAGTACTGATGGTCTGCACGATCCAGAGGGCCTGGTGCTAGACAGACAGactgcagcaaaacaaatacttcaGGAGCATCAGTTTAACTCTTTTACAGAGGAAAAGGTCatttcacagagaaaaaaagtcCACCAGTGCACTGTGTGTCTTAAATTCTTTAATTCCCCTTACAAGCTTCAGAGACACTTCCTTATTCATACGGGGCAGAAACCATTTGAATGTTCTACTTGTGGGAAGAAATTCAGGCAAATGGTGCATCTAAAGCTCCATTCCCAGACCCACATCAAATTAAATTCTCCACTGCACCCCTTCCCTAATGATTTAATTGGACTTAATTACGCTAATCAGCTGCAAGATGAATACTGCACCCGGAATGAGACGGACTGTAACACAACTGCAGAGCGGGCCTTCGGTCAGTCAGAAACGCACGAAATTGCCAAAAATGGCACCGGTGAGTCTCTGGCATCTCCCAAAGGCAAACGGAAGAAGGGTCACCAGTGCACAGTATGTCAGAAAGTCTTCAATTCACCTTCCAAACTACAGAGACATTATCTTATTCATACCGATCTGAGGCCCTTTGATTGCTGGGAATGTGGAAAGACTTTCAGGCAACTTGCTCACTTAAAAGTCCATCAAGAAACCCACAGAAATAGAAGAGAGTTTGGGAATTCTTCACAAGAGGAGATGGTTAGTGGTTCAGAACATTATGAAACCCAGGACGAAAGCCATGGTAAACGTGAGTTCTCCAGCTGGGAGATATCTTTTGATGTTTCAGCACAATTGAATAGCCTCCAGGGGCACAAGCCTGTGGCCTCTCACCCATTGTCAGGGGCAGATTGTTCTGTGAATATACCACCTGACCAACAGTCCAATAACTTTATTCCTAACAAGGCCGAAAATCCCACAGTCCCTTCGCGCGAACCCAAAACAACAATGGGTTTGCAAATGGATCATTTCCCTCTGTTGCAGGAGAAGGCTACCCACAGGATTGGCAGCTGTCGTAATCAGTGCAGCGTCTgctttaaatcttttaaatttGCTTCAAAACTGGAGCGCCACTATCTGATCCACACAGGAGTAAGgccatttaaatgtcttgtctGCGGTGTAATGTTCCGGCAAGCAGCTCATCTAAAAAAACATCAAGTAAAGCACACGAAATCGCAGGATTTTAACTATGCATGTCACAGGGACAACTCTCTGCCCGAAAACCAGCAACCTCTGCCTGGCGATTCTGTACATGAGCTAGCACCTGGAAGTCCTCTGCAGCCCTTTGAAGAGAACGAGCTACAACAGGCCGAACATCTTGAgcttaatattattgttaaacCGGAAGATCCAAGTGAAAACTGGCAGATCAACAGCGATGTGGATATTGAAGTGGCTACAACAAGTGAAACATTCCAGCATCAgcaaccaaaaaataaagaacccaAAATGACCAGAAAACCCCATCAGTGTGTCATGTGCTTAAAATATTTCACTTCCCCCTACAAGCTCCAGAGACACTTCCTGACTCATACTGGGCAGAGACCTTTTGATTGTAAGGTGTGTGGAAAGACATTCAGGCAActagaacatttaaaatttcaCAAACGCACCCATTTTCATTTGGATGTTTTACATCAAGGAGAGAAAACCATTGAGATTAGCTCATCTGCACCTGACCAGATTGTGTGTGAAAAGTTACCTGCGTTGTCTGAGTTGAATACGgatgtatttattcagcaaAATACTCTCAAAGAACTAGGAGAGTCCGACCCCCCTGATGTGAAGACAGAAGATGCTCAAGAAAGCTTTTTCAATTGTGCAGAATCGCAGACCTCTTTTTCAACAGAAGAGGTGCCTAAAGATCCTGTTCTGGGTTGTgaccagattaaaaaaaacaggacgcatcagtgtttgctgtgtttaaaatgctttgattgCCCTTCTAAACTTCAAAGGCATTACCTGACTCATACTGGACAGAAGCCGTTCCGTTGCTTTGCATGTGGTAAGGAATTTAGGCAGGCCATACACTTAAAAGTGCATCAACGCACCCACAACAAGTGGAGGACTTTTAAAAGTGCCTTTCAGCAGCAGAAGTTCTTGAATTCAAACCAATTCAGTAGAGAAATGAACCCTGGATATGAGAAAAGCCAAGGCAGCCTTGAGAACTTTTCACAGTCTGATTTTCAACCAGACTTTGGGCTCCCAGAATCCAAGGAGTCGGATGCATACACTGCGAATGATGTGTCTAAGGACAAAATGTTTCAAGAAAAATACGGTATCACTGTAGATAACTTGGGGGATGCAGACATTAGCAGAAGAGTGTATCAGTGCTCGAAGTGTCTGAAGTGCTTCAGCGCCCCCTCCCAGCTTGAGAGGCACTACCTCATTCATACCGGGCAGAAGCCCTTTGAATGTCATATCTGTCGCAGGGCCTTCAGACAGTCATCCCATTTGAAGGCGCACTACCGAACACATAAAGACATGAAAACGTTGAAAGGTGGCTTTCAGCACAGGAGGTTTATTTCTTTTAGGAAGCTGGCAGACCAAAAGCAAAACCACGCTCGGAAGAAATTCTGTCTGTTGCAGGGTGCATCTAATACAGAGTCATTGCCCTACACCCTTAAAGACATGAAAGGACACCACATAGGCACAGCTGCTTCTGTTGTAGAAAGAGACCAAATGCCAgagcaaaagaaaaaccttACACAAGACCAGACCATTCAAGAACAATCAAATAGTTCTAACGCAGAAGGAAAGAATGTCAAAAGGCGAGGCCTCATCCCTCACATTCTTTCCCAAGCCAGTATCCTCCAAGACCAAAATCTGAAACAGTGCAAGTTTACTGTTGCCGTACAGTCTGGTAATCTAAGACAGAAGAGAGCCATTGTCGGTGTCTCCGAAACACAAGAGAATACAGAGGGCTGCTTCAGTGTGGAGCAACCGATTCTTTGCACTGAAAGCCACAGTGCTGAAAACAGGGAAAATGTTCAGAGCAGCAAAAGGGTTTACCAATGCTCGAACTGTTTCAAATGCTTTGATGCCCCTTCTCAGCTCGAACGGCATTATCTAATTCATACTGGACAGAGACCCTTTGAATGTTACGTTTGTTCTAAGGCATTTAGGCAGCTATCCCATTTAAAGACTCATCAACGCACCCATAAAGAGTGGAGACCATTGAAATATCCCTTTCAAAGTGATGAAAGCAAGGAGACTAAGCAGAATCAGATTAAGCAGGGATCTTctgtaatttataatgtatcCAGTTTTGACCTGGATTCCCGCACCTTTGTCCTCCAAGAACAGAAGGTCAATCGAACGGAGCCAGTAGCAGAAGTTGTGCCTCCTGTACCCACACATGACCTGCCTAACAACAGCACAATATGTCAATATGGCAGCTATGAGGCATGTGTTTTAGGAGGACAAGCTCCTATTGCACCCCAGAGTTGCCTCTATCAGGCTGGGGAAAAGAGAACTGGTAAGAGACCAGTGTACCAGTGCTCGGTATGCCCAAAGAACTTCACCTCCCCTTCAAAACTGAAAAGGCACTTCCTTATTCATACTGGACTGAAACCTTTCAAATGCTATGTGTGTAACAAGTCATTTAGGCAGCATTGTCACTTACAGAATCACCAACACACCCATGCAGCGTTGAAATACCGTGCCATTCGGCGTCCTTCAGAGAACCGACCGCCGGAGAGGACGGCTTTGGAAAGATGCTCGCCTGTAGCCAGCGCCCTTCCAAAGCAGACGCCCCGTGATTCCACAGCGCAGTCAGACTGTCCCCCTGGAGTAAACGTTAACCACTGTTCAACTATTAATGACAATTGTGAACATTCACGTGAGGATTCTGATATTGAATCAAACGGGATACAGGAAAGGAATCGCACAGACTCGGCCGACAAATTTGAAGGTAGAGTCCGACTTGGCAAAAAGAAGCACACATGCTCGGaatgtctgaaatgtttttccTCCCCTTCCAAACTCGAAAGGCATTATTTGATCCATGCTGGAGAGAAGCCTTTCGAGTGTGCTGTGTGTAACAAGACATTCAGACAGGCAGCTCATCTCAAAGTTCATCAGAGAGTCCATGCAAAACAGGTTCATGGCACAGAATATCTCCAAAAGGAGAGTTCAATCAGTGACTTCAGCGAGGACCGCAGCCTGCATATTCACCAGTCCTGTCAGCTGGAAGCCAATTCTGACCCTACTCCCCAGTCTATAGTAGCAACAGAGGAAGGATTGGGGGATCAGTTACCCAAAACTGATTTGACCTCTGACCCTAATGGCTACTGGTGTGAACCCATTTCTGACGGACTGTTCAGATGTGCAGAATGTGATGGTTATTTTGTAACTGAAAGGAAGCTTCAGGTGCacaagtgtgttttaaaaaatcaaacCCAGATTAGAAATCCAAGCAGGAGCCTTTATCAATGTGCTATATGTTTCAAAAGCTTTGATTCGCCCTCTAAGCTCAAAAGGCACTATGTGATTCACACAGGGCAGAGGCCGTTTCAGTGCTCAGTGTGCAGGAAAACATTTACACAGTCATGCCATTTAAAAACTCATCAGCTCACTCATTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187484 lncRNA upstream 563475 7955972 ~ 7956389 (+) True G149001
TU187435 lncRNA upstream 760267 7759369 ~ 7759597 (+) True G148961
TU187384 lncRNA upstream 835767 7683878 ~ 7684097 (+) True G148919
TU187283 lncRNA upstream 1195413 7313907 ~ 7324451 (+) True AMCG00000215
TU187229 lncRNA upstream 1427404 7092025 ~ 7092460 (+) True G148791
TU187549 lncRNA downstream 47712 8572936 ~ 8575124 (+) True AMCG00000251
TU187552 lncRNA downstream 58424 8583648 ~ 8584007 (+) True G149055
TU187553 lncRNA downstream 59264 8584488 ~ 8584967 (+) True G149056
TU187556 lncRNA downstream 143756 8668980 ~ 8673786 (+) True G149059
TU187686 lncRNA downstream 488147 9013371 ~ 9016151 (+) True G149172
AMCG00000245 mRNA upstream 36167 8473574 ~ 8483697 (+) True AMCG00000245
AMCG00000248 mRNA upstream 62576 8442303 ~ 8457288 (+) True AMCG00000248
AMCG00000247 mRNA upstream 93228 8424584 ~ 8426636 (+) True AMCG00000247
AMCG00000232 mRNA upstream 399759 8108618 ~ 8120105 (+) True AMCG00000232
AMCG00000238 mRNA upstream 633420 7871530 ~ 7886444 (+) True AMCG00000238
AMCG00000246 mRNA downstream 2214 8527438 ~ 8550859 (+) True AMCG00000246
AMCG00000244 mRNA downstream 42243 8567467 ~ 8569670 (+) True AMCG00000244
AMCG00000251 mRNA downstream 47796 8573020 ~ 8574704 (+) False AMCG00000251
AMCG00000249 mRNA downstream 55302 8580526 ~ 8585273 (+) True AMCG00000249
AMCG00000252 mRNA downstream 60680 8585904 ~ 8587355 (+) True AMCG00000252
TU187300 other upstream 1157157 7359278 ~ 7362707 (+) False AMCG00000217
TU187301 other upstream 1157157 7361020 ~ 7362707 (+) True AMCG00000217
TU187266 other upstream 1223200 7290666 ~ 7296664 (+) False AMCG00000216
TU187550 other downstream 54493 8579717 ~ 8581112 (+) False AMCG00000249
TU188032 other downstream 1444100 9969324 ~ 9970801 (+) True G149424
TU188165 other downstream 2009366 10534590 ~ 10535137 (+) True G149525
TU188404 other downstream 3457236 11982460 ~ 11985715 (+) False AMCG00000352
TU188603 other downstream 4154446 12679670 ~ 12727903 (+) True G149859

Expression Profile