RNA id: AMCG00000256


Basic Information

Item Value
RNA id AMCG00000256
length 2128
RNA type mRNA
GC content 0.46
exon number 6
gene id AMCG00000256
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 8902907 ~ 8906396 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCAGTGCGCTCCAATGAGAAGAGGTTGTTTTGGTGCCTGTATCTCTAATGGCTTTGACATGGCTGCTGCCTTTCTAGTGTTGTTATACGAATATTCCCCTCCGTTTTACATCTCTGTCATCGCCCTGTGCTTTATCGTCACCGCGGCCATGGTGCTGGGCAGGTTCGGGTTTGACGTACCGGTGATCTTACGTAGCTCTGACGACACAGACCCTCTCCTGAATATCCCGGAAAAGAGAATGGTGCAGGTGAAGAACCCCTTCGCCTTGGATATCGGCAGCACCGCGGGCTCTGTGACGGGTGGAGTGGGTCTGAGGCCATACTGCCTGGAGAGCTGTGTCCTCACCTGCTATTGGGGCTGCACGGCCCAGAGCCTGCAGGCAGCGCTGCAGTGTCACCAGTTCAACGTGCGCATCAACACACCACAGAGGTTCGAGGAGGCCCTGAACAGTGACTACCAGCACTCCCAGACCTTCTTTATTGACAAGGAAGACACACAAGAGAGGCTCTGTCAGCTGCCTGACGACTTGGGGATAACAGATTTTGGGCTCTTACCTCGGTCGCATTACCCCCTAGCTGCCAACGTGACTGTAATTCATGTTCCTGATGACAAATACAGGCTTTCCTCTCGGATTCTGTATCACTACATTCTGACGGCATCAGGGAATGTGTATGACCTGAAGCAACTTTACATGTCGGCAGATGGCAAAGACTGGTCTGGAGTCTCTGGACCTCCCAGCGGTGAGACAGTGGAGGGGCGGGGTGAGGAGAACCCAGAGGAACCGCAAAGCGAGGCGGGGACCGATCCGGAGACGGAGGGCGACGGAGAGACCGGCCTAGATTGCGTGGTGTGCCAGTACGCCCCAGTGAATCGCGTTCTGCTGCCCTGCCGACACACCTGTGTGTGCGACGGCTGCGTCTCCCGGTTCAGGCACTGCCCCGTGTGTCGGGCCTTCGTAATGGAGTCCTTTGCTCTTTCCCCTCCCTccacagaggaagaggaagtaggcAGGGAGTAGGGAATAATGTCCCCCCTGCTTGGCTCACTTCTATTGGAGGAGAAAAGCCTCCAGGACATGGCAGTATGGCGTCAGCTGCCTCGGCACGCCTTCACTTTATATTGATGAAGAATACGTTGAGATATCCTGAAAAATGGTTTTCTCTTTAAAGTCTGATGAGACCGCTTTTGGATTGCACTCGCTCTCGGTAGAAACCTttcacaaaaaggaaaaacaggcACATAAAGCTCAGACTTGCTTCACATTGCATCTCCTTTTAATCCTTTACATTCATCAGAAGGGTTTCATACGGATGATGGACTTTTCCGCACCGTGACGGTGTTTTGAAACTCAATTTAATGTCAAGTATTGTAGGATATTATGCCAATGGCACAAGGACTCGTATTCCTTTGCTGACAGTGAACAGTGGAAATCCctaatgcagaagaaaaaataaaacaatatccgCTTTCTTAAAAGGTGAATTCAACTTTTCAAATCTAAGCATAATTAAATCTGCATAGAAAGGGTATAAACcatcattttcaaaacagataATAAATATCAGTAGTCAAACTATCACCATTTATTGATAAAGTACTTAAAACTAAGTATGAACTGTCGTCTACATTACAGTGTGCAAATCCTGACATTTAAGACATACATCATATTTTAGTACCCGATAGAATTAATTTTGAGAAGTAATGCACTAATCTGTATTGACCATTTTCCCCCTTCCTCTAGTCATGAATGTATATCATAGCCAGTGAAGTATGAGCATGTTATTTTGATGAgaacaaagcattttttttctccttaacaTTCACAAAAATTaattgtggagtagtggtcagggctctggcaGAGGTTTGTGGGTTCAATCTCAGGTGGTGAacactgttgtacccttgagcaaggtactttacctggattgctccagtaaatacccagttgtataaatggataattgtatgtaaaaaataatgtaatatattgtaagttgccctggataagggctacaaaatataataataattactacttGGATCATAATTGCGCTTTCTGTTTTTTAGCCTTTGATGATCGTTAATTTACTGTTTTGTTACAGTGTCGATGCTTTGAATCttgtta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187556 lncRNA upstream 229121 8668980 ~ 8673786 (+) True G149059
TU187553 lncRNA upstream 317940 8584488 ~ 8584967 (+) True G149056
TU187552 lncRNA upstream 318900 8583648 ~ 8584007 (+) True G149055
TU187549 lncRNA upstream 327783 8572936 ~ 8575124 (+) True AMCG00000251
TU187484 lncRNA upstream 946518 7955972 ~ 7956389 (+) True G149001
TU187686 lncRNA downstream 106975 9013371 ~ 9016151 (+) True G149172
TU187785 lncRNA downstream 373667 9280063 ~ 9285151 (+) True G149253
TU187853 lncRNA downstream 576963 9483359 ~ 9486681 (+) False AMCG00000285
TU187903 lncRNA downstream 608426 9514822 ~ 9515600 (+) False AMCG00000286
TU187924 lncRNA downstream 655161 9561557 ~ 9573564 (+) False AMCG00000281
AMCG00000252 mRNA upstream 315552 8585904 ~ 8587355 (+) True AMCG00000252
AMCG00000249 mRNA upstream 317634 8580526 ~ 8585273 (+) True AMCG00000249
AMCG00000251 mRNA upstream 328203 8573020 ~ 8574704 (+) False AMCG00000251
AMCG00000244 mRNA upstream 333237 8567467 ~ 8569670 (+) True AMCG00000244
AMCG00000246 mRNA upstream 352048 8527438 ~ 8550859 (+) True AMCG00000246
AMCG00000255 mRNA downstream 18001 8924397 ~ 8945589 (+) True AMCG00000255
AMCG00000258 mRNA downstream 90736 8997132 ~ 9004514 (+) True AMCG00000258
AMCG00000259 mRNA downstream 112266 9018662 ~ 9024727 (+) True AMCG00000259
AMCG00000266 mRNA downstream 129229 9035625 ~ 9079959 (+) True AMCG00000266
AMCG00000271 mRNA downstream 214669 9121065 ~ 9156942 (+) True AMCG00000271
TU187550 other upstream 321795 8579717 ~ 8581112 (+) False AMCG00000249
TU187300 other upstream 1540200 7359278 ~ 7362707 (+) False AMCG00000217
TU187301 other upstream 1540200 7361020 ~ 7362707 (+) True AMCG00000217
TU187267 other upstream 1606243 7290666 ~ 7296664 (+) True AMCG00000216
TU188032 other downstream 1062928 9969324 ~ 9970801 (+) True G149424
TU188165 other downstream 1628194 10534590 ~ 10535137 (+) True G149525
TU188404 other downstream 3076064 11982460 ~ 11985715 (+) False AMCG00000352
TU188603 other downstream 3773274 12679670 ~ 12727903 (+) True G149859
TU188861 other downstream 4784443 13690839 ~ 13692589 (+) True G150069

Expression Profile