RNA id: AMCG00000258


Basic Information

Item Value
RNA id AMCG00000258
length 2246
RNA type mRNA
GC content 0.42
exon number 6
gene id AMCG00000258
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 8997132 ~ 9004514 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGGTCCACCAGGGTGAACAGACATGGACAGATGGGGGACAGACATGGACAGCTGGCATGCAATGGAGATGACCTGAGGAGGCAGCCATGGGCGTGCGGGATGATTCTGGACGAGACGCCACTCTTTGACCCTGCGTTGCTTCAGGAGTTGGACTGGAGTGCCAACAAGGTGTCCTTCTCCCCGCCCATCTCCCCCACTCAGCCTGGCGATGGCCTGGTGCTCCGGCCACTGTGCACCGCTGACATCAACAGAGGTTTCTTCAAAGTCTTGTCTCAGCTCACTTTGGCTGGAGACGTCACACCTGAACAGTTCATCAAGAAGTTTGAGCATATGAGGCGGACAGGAGATTATTATGTCGTCGTGGTAGAAGACAGCAGCCTTCGCCAGATTGTCGCCACGGCCACGCTCATAATTGAACACAAATTCATTCACTCCTGCGCCAAGAGAGGCAGGATAGAAGAGGTTGTAGTGAGCGACATCTGCCGGGGGAAGCAGCTGGGCAAACTgTTAGTTTCATTGCTGACTCTTCTCAGCCAGAAACTGGACTGTTACAAAATAACACTAGAATGTGCACCCAAGAACGTGGCCTTCTACGAGAAATTCGGCTACTCCGCGTCGGATGAAGCCTACATGCAGCGCCGCTTCTGTCAGTAAGCTGCGGCCGTCTCCCACACCTGGCGCGGTGCCCCCGGCTGAGACCCTGGCACACATCCAACCCATCCTCGGAGATCTGGAAATCTCTCTAGCGGAGACCCACCAACCATCAGCCCATAAGGCTACCTCACGTTTGTCCATCTTTCTGTCCTTTGGAAAAGGATTTGGAAAATAAGGGCACATATTGTGCTCCCAAACAGGAACTGGCCGTGTACTGTACTTCTCAATATGCAACCTGAATGCACAAGTGTAACCTGGCCAAGGATGAGTGGTTTTCACTACTTACTAAGGAGTCTTTAGCGCGGCAATTGTTGCATCCTATATTTAGTTTACAATAATGtacagaacttttttttttttttttaataatgctaCAGTCTCACAGCACAAGGCTGTAAACCACACTAcaatttgaaagaaagaaaaaaatcataaatcaaaGGACTTGCAGATGTTAGTGAGATGGAAGGATAAGAAATCCTATGCATTACTATTGGTTCTGTAACCTAATTATATGTAGTTTTCATTGACaatgaaagtgaaatatattgGATATGTACAAATGTAgtttaatatacattgtttatGTTAGAATGATTAAGCAATTGTCCCGCTGGTACACAAGATgtcaattttttaattttctttcccgTCGGATTTAGTAATGTATATCCAGGATTGGGGGATTCATGAATAGTGTCTTAAATCACACGAAGGTACTTAAATACGTGGCATTTGTTCATTCGACAACTTTTGTTCCAGAGCAACCATGCATTTTGagagatttaaattatttttctactttttttagatgtaaaataaaaagccaaagATGGTGTGAAAACGATCAAAACTCCTCTGTATGATAAGGTGAACCAACAACGGGAGGTACCAGCTGCCCATTCCAATCAGAACAGAAATCCAGTGCACTCGTTTTTGGAGACGTCAACCTCCATTTGGTACAGCAGGGCAAAATGCCAACTACTGTGAGCCTTTGGAGAAAGTCATTTATGCAGCAATTGTGATTGATGCTAGACAGTGGCCTGAATCACACAACACTTCTGCACTGAATGGAAGCTAGACCCTTAAAAACAAGGGCTTCTCAGGatgacaataaatgaataattatggAACAGATCTTAAAATCGTTGTGGGAACTAGTGGTTCTTTTTTCAGATGTTCTTTAAAAAGCTGAAGAGTCCTGATGTAAGAAAACCTTGCACTTTTCAAAAAACAGGGATAATAGATGTagtgtataataataacataatagtACAGTCTTCATAAAGActacaaatatttttcagacAGGAAAAGTCAAAAGAGCTTGGCATTgtcttttttctgtctgtgtgaatgtcTTTGAGTGACAGTTACTTCACCTAGTCTTACAAAGAAAAGTCTGTAACGGTCTATAACATGGTATAGGATATACAAGATGTTGTAGGAATGtagttgcttttatttaatttagtagtATGAAATCATCAGTTTATTTGATATCTAGGGATATTTGGGTAATgcctttattctttatttatttgaaagaattAAGCCAATTTgtagtcaaaataaaataccatttgAGA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0008080 N-acetyltransferase activity molecular_function

KEGG:

id description
K00621 GNPNAT1, GNA1; glucosamine-phosphate N-acetyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187556 lncRNA upstream 323346 8668980 ~ 8673786 (+) True G149059
TU187553 lncRNA upstream 412165 8584488 ~ 8584967 (+) True G149056
TU187552 lncRNA upstream 413125 8583648 ~ 8584007 (+) True G149055
TU187549 lncRNA upstream 422008 8572936 ~ 8575124 (+) True AMCG00000251
TU187484 lncRNA upstream 1040743 7955972 ~ 7956389 (+) True G149001
TU187686 lncRNA downstream 8857 9013371 ~ 9016151 (+) True G149172
TU187785 lncRNA downstream 275549 9280063 ~ 9285151 (+) True G149253
TU187853 lncRNA downstream 478845 9483359 ~ 9486681 (+) False AMCG00000285
TU187903 lncRNA downstream 510308 9514822 ~ 9515600 (+) False AMCG00000286
TU187924 lncRNA downstream 557043 9561557 ~ 9573564 (+) False AMCG00000281
AMCG00000255 mRNA upstream 51543 8924397 ~ 8945589 (+) True AMCG00000255
AMCG00000256 mRNA upstream 90736 8902907 ~ 8906396 (+) True AMCG00000256
AMCG00000252 mRNA upstream 409777 8585904 ~ 8587355 (+) True AMCG00000252
AMCG00000249 mRNA upstream 411859 8580526 ~ 8585273 (+) True AMCG00000249
AMCG00000251 mRNA upstream 422428 8573020 ~ 8574704 (+) False AMCG00000251
AMCG00000259 mRNA downstream 14148 9018662 ~ 9024727 (+) True AMCG00000259
AMCG00000266 mRNA downstream 31111 9035625 ~ 9079959 (+) True AMCG00000266
AMCG00000271 mRNA downstream 116551 9121065 ~ 9156942 (+) True AMCG00000271
AMCG00000273 mRNA downstream 327022 9331536 ~ 9355148 (+) True AMCG00000273
AMCG00000274 mRNA downstream 351467 9355981 ~ 9363434 (+) True AMCG00000274
TU187550 other upstream 416020 8579717 ~ 8581112 (+) False AMCG00000249
TU187300 other upstream 1634425 7359278 ~ 7362707 (+) False AMCG00000217
TU187301 other upstream 1634425 7361020 ~ 7362707 (+) True AMCG00000217
TU187267 other upstream 1700468 7290666 ~ 7296664 (+) True AMCG00000216
TU188032 other downstream 964810 9969324 ~ 9970801 (+) True G149424
TU188165 other downstream 1530076 10534590 ~ 10535137 (+) True G149525
TU188404 other downstream 2977946 11982460 ~ 11985715 (+) False AMCG00000352
TU188603 other downstream 3675156 12679670 ~ 12727903 (+) True G149859
TU188861 other downstream 4686325 13690839 ~ 13692589 (+) True G150069

Expression Profile