RNA id: AMCG00000281


Basic Information

Item Value
RNA id AMCG00000281
length 3571
RNA type mRNA
GC content 0.44
exon number 14
gene id AMCG00000281
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 9561557 ~ 9591088 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTGACCCAGTGCTCGCGTAGGATTTTTGCGAAATTCACCATGGTGCCTAGGAGAGAGGACATAAAGAAGGTGTTATTGACATCAGGCACAATGACATCCATCATCAAGCTGACGGCGATTTCGGGGGTGCAGGAGGAGTCGGCGCTGTGCTACCTGCTGCAGGTGGACGAGTTTCGCTTCCTGCTGGACTGCGGCTGGGATGAGAGCTTCTCCATGGACATCATCGACGCAATGAAGAGACACGTTCACCAGGTGGATGCAGTCCTCCTCTCTCATCCCGACCCTCTTCACCTCGGAGCCCTTCCTTATGCTGTGGGCAAACTGGGCCTGAATTGCACTATTTATGCCACCATTCCTGTGTACAAAATGGGGCAGATGTTTATGTATGATCTATATCAGtCTCGACACAACACTGAAGACTTCTCCTTGTTTACCCTGGATGATGTAGACTCAGCTTTtgacaaaatacagcagctaAAGTATTCCCAGATTGTCAACTTGAAAGGGAAAGGACATGGCTTGTCTATAACACCTCTTCCAGCTGGTCACATGATTGGAGGAACAATCTGGAAGATTGTGAAGGATGGGGAGGAGGAGATTGTGTATGCAGTAGACTTCAACCACAAGAGGGAAATCCATTTGAATGGGTGTTCTTTGGAAATGGTGAATCGGCCATCCCTACTCATCACGGATTCCTTCAATGCTACTTATGTGCAACCTAGGAGAAAACAGCGGGATGAGCAGTTACTAACTAATGTGATGGAGACGCTGAGGGGCGATGGCAATGTGCTGATCGCGGTGGACACAGCGGGGAGAGTGCTGGAACTGGCTCAGCTCTTGGATCAGATCTGGAGGACTAAGGATGCCGGGCTGGGGGTCTATTCTCTTGCCTTGCTCAATAACGACAAGAGGAACAACCCCTTCCAATTCCGCCACCTCTCACTGTGCCACAGCCTCTCGGATCTGGCCCGAGTTCCCAGCCCCAAAGTCGTCCTGGCCAGCCAGCCAGACCTGGAGTCGGGCTTCTCTCGTGAGCTCTTCATTCAGTGGAGCCGGGACCCCAAGAACTCTGTCATCCTGACTTACAGGACCACCCCTGGCACCCTGGGGAGGGTGGATGTGGACTCCAGTGATGAGAGTGACATGGAGGAGGATCTGGAGCAGCCCACCATTGGCAAGGCCAAGCACCACGACCTCATGATGAAGGGCGAGGGCAATCGGAAGGGCAGCTTCTTCAAGCAGGCCAAGAAATCCTACCCTATGTTCCCCACCCATGAAGAAAGAATCAAATGGGATGAATATGGGGAAATTATCAGGCCGGAGGAATTTCTTGTCCCTGAATTACAAGCCACCGAAGAAGAGAAGAACAAACTGGAATTGGGGATGACCAATGGAGAGGAGCCTATGGACCAAGACCTGTCAGATGTGCCCACAAAGTGCATTTCATGTACAGAAACCATCGAAATCAAAGCAAGAATTACCTACATAGACTATGAAGGCCGATCAGACGgggattcaattaaaaagattataaatCAGATGAAACCGCGACAGCTAGTGATCGTGCACGGCCCTCCAGAAGCCAGCCAGGACCTTGCCGAATCGTGCAAGTCTTTCAGTGGGAAGGAAATTAAGATTTACACCCCCAAGCTACAGGAAACCGTGGATGCCACCAGTGAGACGCATATCTACCAAGTCAGACTGAAGGATTCCCTGGTAAGCTCACTGCAGTTCTGCAGAGCCAAAGACACTGAGCTGGCCTGGATTGACGGGGTGCTGGACATGAGGGTCATCAAAGTGGACACTGGAGTGATCATTGAAGAGGGGGACATCAAAGAGGACACTGAAGATGGGGAGCTGCCCATGGAAATTCCCTGCGCCTCGtccttgacctctgaccccagtGCCATCGCGCAGCAGAAAGTGATCAAGACGCTCTTTGGGGATGATGAGAAGGAAGTGTCAGAAGAGAATGATATCATTCCTACCTTGGAGCCCCTGCCCTCGAATGAAATTCCAGGGCACCAGGCAGTTTTTATTAACGAACCCAGGCTATCGGATTTCAAGCAAGTGTTGTTACGCGAGGGAATTCAGGCCGAGTTTGTAGGGGGAGTCCTCGTGTGCAACAACCTGGTAGCCGTTCGCAGGACTGAAGCTGGGCGAATAGGCTTAGAAGGATGCCACTGCGAGGATTATTATAAAATCAGAGAGCTGCTTTACCAGCAATATGCAGTTGTTTAACAACAATGATTAATGctgaaattgacttttttttcctaaagGATTGTTATGttcaatactgttttttttgttttttgtttctacaGTGGCAGGCTACATACCTGTTGAATTATTTGACTTGTAACAAGCCAGAATTACAGTGGTTTAGATACTCAGTGAAGTGCATTCTTTTGGCAGAAGTCAAATTGAATAAAACTTGTatgtaaattgtttaatattcttaaaaaaaacaatcataattgAGAGTGTCTGCATGGTGtgaatgttttatacacatgaTTAAATTTTTTAAGATCAACATTTATCACTAAGTCagacaaaacatacaaacactttAGCTGTTAAATTCCATCTTTATTTGGGGGTgcacattaaacatatttttatccTCTTAAGTGTAATATCCCAAAGTCACATTAAAACAGCACTGATGGTGTGGTCAACAGCCTGCTGTGTCATCAGAGAGagttgtattttgaaatgcaaggaAACCAAgggaatttaaaatacaaactattCAGTTCTGAATCGAATCACATGCTCTGTATTGGTGTAAATCCTCATTACTGTTTTATTGCTGAGGTTAATAATGAGGCATAATGTCCTTATTATTCATACAACTCTGCAGCAGCTATGCTTTGCTATCAGTATTGCTTCTGTTTATTTCCATTCAGTGCAAAAGTGTCTTATGGCAGTCATCTCTCCAAACATCTTCAAATTGTGACTTGCGTTTTGTTCTAAGATTTTATATATGTCCAGTTTCGGTATTccgttttacattttgtgttgaatTTTGTGTCGCCACATTTTACTTAGGAATCAGataatgtgtttgaaatgtatgtgaCTGATGGCTACAATGTGTAGCAATTAATGCCAGCAGAATAGTTGAATGGAGTTTTGACAACCAATAGAGTCAGATTTTTCAGGGTCATGGGACAGAACTGACAGAAAATCTTCCTTAACAATCAGTTgttaattgtttgtgtctttggaatatgttttattaattgacaGAGgtgttaactttttttttttttatcctgttcATGTATTCAGTTATAGTAGGCAATACTCACaccattcatttaaaaaaagtgttattctGTGATCCTTTTAGTTTaacaaatattgttaattaaaatacacgTAGTTATGAAGAGAGAACGCAAAGGAATTTTAGGTgattaaatccaaactttgGATGACTGCTCCATTGATTTCTACATTGTTTTAGCAGTGGATTGACAAACGTTATTGTAAAGGGAAGGTAAACTGTTGGTACAATATGCTGATGATCAATATAGTCAATATAAGGCAATACAGC

Function

GO:

id name namespace
GO:0006378 mRNA polyadenylation biological_process
GO:0006379 mRNA cleavage biological_process
GO:0005847 mRNA cleavage and polyadenylation specificity factor complex cellular_component
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K14402 CPSF2, CFT2; cleavage and polyadenylation specificity factor subunit 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187903 lncRNA upstream 57589 9514822 ~ 9515600 (+) False AMCG00000286
TU187853 lncRNA upstream 86508 9483359 ~ 9486681 (+) False AMCG00000285
TU187785 lncRNA upstream 288038 9280063 ~ 9285151 (+) True G149253
TU187686 lncRNA upstream 557038 9013371 ~ 9016151 (+) True G149172
TU187556 lncRNA upstream 899403 8668980 ~ 8673786 (+) True G149059
TU187938 lncRNA downstream 128859 9719947 ~ 9776988 (+) True G149359
TU188022 lncRNA downstream 366625 9957713 ~ 9962571 (+) True G149416
TU188017 lncRNA downstream 381960 9973048 ~ 9975172 (+) True G149415
TU188070 lncRNA downstream 430334 10021422 ~ 10021853 (+) True G149450
TU188079 lncRNA downstream 438606 10029694 ~ 10030786 (+) True G149454
AMCG00000280 mRNA upstream 12713 9557518 ~ 9560476 (+) True AMCG00000280
AMCG00000286 mRNA upstream 26778 9515369 ~ 9546411 (+) True AMCG00000286
AMCG00000288 mRNA upstream 64265 9501693 ~ 9508924 (+) True AMCG00000288
AMCG00000287 mRNA upstream 71821 9487917 ~ 9501368 (+) True AMCG00000287
AMCG00000285 mRNA upstream 86500 9440061 ~ 9486689 (+) True AMCG00000285
AMCG00000283 mRNA downstream 97659 9688747 ~ 9705449 (+) True AMCG00000283
AMCG00000282 mRNA downstream 130802 9721890 ~ 9747008 (+) True AMCG00000282
AMCG00000293 mRNA downstream 237001 9828089 ~ 9840429 (+) True AMCG00000293
AMCG00000294 mRNA downstream 273899 9864987 ~ 9876944 (+) True AMCG00000294
AMCG00000292 mRNA downstream 320048 9911136 ~ 9920082 (+) True AMCG00000292
TU187550 other upstream 992077 8579717 ~ 8581112 (+) False AMCG00000249
TU187300 other upstream 2210482 7359278 ~ 7362707 (+) False AMCG00000217
TU187301 other upstream 2210482 7361020 ~ 7362707 (+) True AMCG00000217
TU187267 other upstream 2276525 7290666 ~ 7296664 (+) True AMCG00000216
TU188032 other downstream 378236 9969324 ~ 9970801 (+) True G149424
TU188165 other downstream 943502 10534590 ~ 10535137 (+) True G149525
TU188404 other downstream 2391372 11982460 ~ 11985715 (+) False AMCG00000352
TU188603 other downstream 3088582 12679670 ~ 12727903 (+) True G149859
TU188861 other downstream 4099751 13690839 ~ 13692589 (+) True G150069

Expression Profile