RNA id: TU187924


Basic Information

Item Value
RNA id TU187924
length 2402
lncRNA type sense_over
GC content 0.36
exon number 3
gene id AMCG00000281
representative False

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 9561557 ~ 9591088 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CATAAtctaatttaacatttaataaaatctgtattacattatgtattcaattatgCATTGGGAAGTTTACAGGCAACAATAGAGCTTCACAGAATGTATATGGCAATAAAGTTCAAAGGAAGAAATTACTGATTCAAGGCTGGACCTAATGTAATTACTACTGCTGTGAACTGGACAGCGCCAAAACCAGATGCTGTTATTCATTTCATCTGTGCTAGGAAGGTACAGCTTTCTGCACTGCCAGCATCCAAACAAGCctgagaaatatataaattttaCAAGCAATAGGAGGAGTGTTCACAGacccaaaacaaacatattcatGTTCAAagttttatgaaagaaaaacaggactataaaataataatctgaaatgaCTGTATCTTCACACACATTGTTTCtattactaaaacaaaactaccCTGGATGTCAGATGCAAGTGCAGTATTTTAGTTGTATGTACACAGGTGCCCAAGGTTTCTTTCTGCAAAGGTACATTCATTGGCTCAGATTGATTGAAATTAGTAGGTCCTGAGATTGGAAGGGCAAAATGGGACCCGATGGCTTTGAGACCCGAATGAATGATAGTGTTTTTCAGGAAATGGGATGTCCTGTACAACTGTTTAGTTTTATTGACCAGTACAGATCGAACCACACAATTGCAACAGGCAACCATTCCGTAGTGTGTTGTTTAGGATGAAAAGTCAATATGCCAGTTTGGTAGTGCAACATATCTGTATCCCCCCTCACCACCCCCAGTCCAAAATTTTGACAGTCCATTTTTGTGGGGCTGActtgtatatataaagtaaattaacttatttatggATATTTCAGCAGGCTTATTTCACTGAAGACAAGTGCAAACTGAAGTCACTGTGGTAGAATGTATAACATGTTTGGAACTCTTCCAAATAACAGTGTCATCTATAAAAATCTTTACTGATTGTTTTCTGCAGCAGGGTATGAAATTAATAtaacatgatttttttaatgaataatggTTTGCTGATCAGTTGAAAAgctccattcatttattttaaataatgaactaATCACAATTTCAAAACGGGGACAAATCTAAAGGGACTACCCattggaaatgttttatatttcaattaaatctaaACATCTTCAGCTGAACCTTAACATCCCGAATCAATTTCACTAAACCGCTcggagcaaaaaaaaaattcttaatAAAACCCTTTAAAGCAAAGCACTTTatgtaatgaaaaagaaaatgaaattgcaCCAGATTCacaaagttttagttttttggcatACATTTTTCGTGTTATCCAAACCTCGTAGATACAGTCAGTTCAGTTTagtaaacataaaaacataaaaaaagaattgtGTGCTTGGAGTTTTATGACAGACAACTGTTGCAGTATTGATCTATAGCTACTTATTTGCTTAAATGTAACTAAGCAAGAAAAAGTCCCTATGCTGTTTTGTAAACAAAGTACAATAGAAATCAACAACTTATTTCAATAAGGGAGAAAATCATTGACTGTGATGTTTCCCCTCCCATCAAATCAACAATCTTCTAAGAGCAAACAGTCCTGGTTTAGCTGGTTGTCTTCTCGGCTGTAATTACTAATAGAAAGGATAAAATTGAGGCAGAAAGATTTTTAAAGGGATGACCTTTGCAGTGTGATGCTCAAGATTAAGTGGGGTTGAGTATtaatccttgtttttttttttttttttggataaagtacatttatttttcctgatgtTGGTCATTCCAATACAGACCTCACACAAAGTCACCAGATAAACATGTAGACCGAACCCTGTACAGTATCACAACTGGATAGATATTCCTGTAAAAATgacttaaatatttgttatggatttatttgtttttcttgatagAAGACATTTACTTCCAGGTTACTTCCTCTCCTGGTTTCAGTTCCCTTTGTACAACAAGCTCTTATTTCTGAAAGCTGTGAGTTTGGCATCATTTCTTCGGTCCATATAAACCCCAATCACAAAGCCAAGAGGGACAAGGATGTTGACCCAGTGCTCGCGTAGGATTTTTGCGAAATTCACCATGGTGCCTAGGAGAGAGGACATAAGTACGTACAGATTCATGTTTCGGCTGCGCGACGTTCCTTCAGCAGCGTTTCACAGCATCCAAAATCCTGGATTAGAAGAGTTTAATCATACCTTGAAAGCAGGGATGTGGTAATATGTCTAAGAATAATGTAGATAGGTAGCCTTGTTAATGGATGCTGATGCTATGGTTCAGATACTGCCACACCAAATCTGCctacagtaaaatgtgtttaggTCTTACCACCTTTATGTGAGGGTGGTAATGCTATGTGTGGATTGGAAAACTTGGCATATTTTTACAATGCTCATCTTTGAGATTAATAATTGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187903 lncRNA upstream 45957 9514822 ~ 9515600 (+) False AMCG00000286
TU187853 lncRNA upstream 74876 9483359 ~ 9486681 (+) False AMCG00000285
TU187785 lncRNA upstream 276406 9280063 ~ 9285151 (+) True G149253
TU187686 lncRNA upstream 545406 9013371 ~ 9016151 (+) True G149172
TU187556 lncRNA upstream 887771 8668980 ~ 8673786 (+) True G149059
TU187938 lncRNA downstream 146383 9719947 ~ 9776988 (+) True G149359
TU188022 lncRNA downstream 384149 9957713 ~ 9962571 (+) True G149416
TU188017 lncRNA downstream 399484 9973048 ~ 9975172 (+) True G149415
TU188070 lncRNA downstream 447858 10021422 ~ 10021853 (+) True G149450
TU188079 lncRNA downstream 456130 10029694 ~ 10030786 (+) True G149454
AMCG00000280 mRNA upstream 1081 9557518 ~ 9560476 (+) True AMCG00000280
AMCG00000286 mRNA upstream 15146 9515369 ~ 9546411 (+) True AMCG00000286
AMCG00000288 mRNA upstream 52633 9501693 ~ 9508924 (+) True AMCG00000288
AMCG00000287 mRNA upstream 60189 9487917 ~ 9501368 (+) True AMCG00000287
AMCG00000285 mRNA upstream 74868 9440061 ~ 9486689 (+) True AMCG00000285
AMCG00000283 mRNA downstream 115183 9688747 ~ 9705449 (+) True AMCG00000283
AMCG00000282 mRNA downstream 148326 9721890 ~ 9747008 (+) True AMCG00000282
AMCG00000293 mRNA downstream 254525 9828089 ~ 9840429 (+) True AMCG00000293
AMCG00000294 mRNA downstream 291423 9864987 ~ 9876944 (+) True AMCG00000294
AMCG00000292 mRNA downstream 337572 9911136 ~ 9920082 (+) True AMCG00000292
TU187550 other upstream 980445 8579717 ~ 8581112 (+) False AMCG00000249
TU187300 other upstream 2198850 7359278 ~ 7362707 (+) False AMCG00000217
TU187301 other upstream 2198850 7361020 ~ 7362707 (+) True AMCG00000217
TU187267 other upstream 2264893 7290666 ~ 7296664 (+) True AMCG00000216
TU188032 other downstream 395760 9969324 ~ 9970801 (+) True G149424
TU188165 other downstream 961026 10534590 ~ 10535137 (+) True G149525
TU188404 other downstream 2408896 11982460 ~ 11985715 (+) False AMCG00000352
TU188603 other downstream 3106106 12679670 ~ 12727903 (+) True G149859
TU188861 other downstream 4117275 13690839 ~ 13692589 (+) True G150069

Expression Profile