RNA id: AMCG00000282


Basic Information

Item Value
RNA id AMCG00000282
length 4902
RNA type mRNA
GC content 0.44
exon number 9
gene id AMCG00000282
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 9721890 ~ 9747008 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gagcaaaatgagagagagagagagagagagagagagagagagagcgctctGTACAGACTTTCCTGCTCTTAActtttctcccctccctctttccATGGTCCACTCCCATCTGCCACACTGAGAAGTTTTTCTCACAGATGCACATCTAAACCATAGCCGTACAGAGAGCAAAGATGGAGAGGGAACCCTGGCTGAGAGAAGGGCGCAGGGGGTGAATCTCGCCTGATGCATCGAAGTCTTGATGGGCTGAGAAGAGTTGCAGAAGCCCTGAGCCCCCATCTGAAGCACCGTAATGATGAAAACATCTGAACTTCCACAGGAAGCTGGATGCTCTCCTGGGGTTGTCCCAGACCCCAACACCAAGGGCAATGAACCCACCTCTCCCCTCAGGAGTCAGCTAGTTCTGCCTGGCATCAGCATCCTAGAGAAACTCATCAAGACCTGTCCAGTTTGGCTCCAGCTTGGCATTAGCACGGAGCGGGCATCTGAAATCCTGCAGAGAGAACCACCAGGGATATTCCTGGTGAAGAAGAATTCAAGTCTGAAGAAAATGGTGCTTTCGGTTAGTTTCCCAGACCGAGCCGGAGAGCCGCACGTACAGGATGTTCTGATCAAGGAGGAAAAAACATACGTACTCCCTTTCACATTGAAGCTGCCCCAAGTTATCATTGAGGCAACAAAATATGAAGATATGGAGATGATTTCTAACCTGGGCTCAGATTTCTGGGGTTCGTCTCTGAACAGAAGACTGGATGCTGTCAAGGTTCGTAATCAGGGCAGCAGCGGTGGTGTCTCGAGAGTGGGGCAGAACTTCCAGACCGATGCAAGCCAATGCTCATGTGAGATTGAGCTGTCAATAGGAAATGACAGGCTGTGGTACGTCAACCCTATTTTTATCGAAGAGTATTGCAACAGCCTGCCTTCAGCTGCTCCTATAACCAGAAGCCAGAGTCTGATCACTCCCAATGCTGCACAACCCAGATACAAGAGGCCACCTCCCATTCCTCCTCGACCTCATACAGCAGAGGACTTGTTCGCAGGAGCAAAGGAAGCTAAGGACAAGGCTGTTGACATACCTCGCTCAAAAAACCAAGAGATAAAAGCGGGACAAACAGAGGAAGGAAGCAGTGGAtcgaccaaactcccagctccTAAACCTGAATGCATCACGGACCAATCCAAAGCCCCCAAGAATGTCCGCATCCCTCCAGTCCCCCCCAGGAGGAGGCTGTCCGAGAAGATGTCTGAAGAGTCTGTGAAGAAAGAAGAAGTTGCTTCGGAGGTGAAAAAGCATGCAGACACAGTGCCTGTTGCCACTCTAATCTGCATCGAGGACACCCCAGTGGCTGAGACAACCTCAGAGAAAGCCCCAACGGCGGGTATGCCGATCATTGAGGAAACAAAAACCATAACCCCGGGAACTGAAAGCCCAGCACACGTTCCAGGTCCCTTGTTAACGGTAAAAAAGATGGCACCCATTCCCCCGCCACGGAAGAAGAGATTGTCTCAGGTGACGCCTAAGCCAGAATCTCTGGAAGTCAAAGAACTTGTGAGTTTGAACTCCACGGCAACTCCTAGGACCGAGCCCGTCGTTTCTCCTCAGACCTCCAGCACGCCCACCTCTGTACGCCGATCTCTGAACTCTGTGGAGCTCAAGGACTGTGACGTGTCTCTGTACTCACCTGACGGAAACCTCACCGCTATTTTGGACCACGACTCGTACTCCACCAGCAGTACAGAAGAGGAAGCAGATGTCGTGGGTAGTTCTGCCTGCACCGTGAAGAGACACCCCACCATCATGCTAGACAAAGCCAAGCAGCGGCTGTCTATGGTCAACCTCTCGCACATGTTCACGGGCTTTATGTGCACTGACAGGAAGCTGCAGAAAAAGATTGTGGAGCTGGCGAAAGACAAGGACTCTTACTTTGGGAACCTAGTGAGGGACTACAAAACCTTCACCCTGGAGACCATGAAGAAGCATTCCTCCAGCACGGAGATGCTGCAGGAGATCCGCCAGATGATGACTCAGCTCAAGAGCTACTTAATACAAAGCGCTGAATTACAGGGACTAGTGGAGCCCATTGTCTACACAGATGAAAAACTagAAGCCATTATTGAGGCAGCGCTGTGCAAAAGTGTCCTGAAACCACTACGGGAGGCGATCTACACTGAGCTGAAGGAAATCCATACGAAAGACTCGTCTCTGAAAATGCTCAAGGACAACCAGAATGTCGTCCttcacaccaccaccaccgacCTGGGGGTGACCACCAGTGTCCCTGAGGCCCCCATCATGGAAAAGATCCAACTGAAGTTCACAAACCTACACAAGGAGTACTCCCCGGAGAAGAAGATCGCCATCTTGCTCAAAACCTGCAAGACTATCTACGAGTCCATGTCAGTTGGATGCCCAGGGAAACACCACGGTGCTGACGATTTCCTCCCAGTGTTGATGTACGTGTTGGCGCGGAGCAACATGGCGGCCATCTTGCTTGATGTGGAGTACATGATGGAGCTAATGGACCCAGCCTTACAGCTCGGGGAAGGTTCTTACTATTTAACCACAACCTACGGCGCACTGGAGCACATTAAGAACTACGACAAGATGTCAGTGACACGGCAGCTGAGCCTGGAGATACAGGACTCCATTCACCGCTGGGAACGACGCAGGACTCTGAACAAAGCCCGGGTTTCCAGGACGTCAGTACAGGATTTCATTAACGTCTCATTCCTGGAGGCGGGATCCAATACCAAGACCCTGGGAGCGAGACCCAGCACCACAACCCAGGATCTGTGCAACCAGTGCGCCGAAAAATTCGAGATCCAGGACCCGGAATGCTACAGACTGTGTGTATTAGTGGATGGGGCTTATCAACAGCTCTCCCCCGATGATTTCCCCCTGACTGTCAAAGCCAGCTTTCACCACAGCGAGCCCAAGAAAGAGTACTATTTTGTGTACAAGCCCATGAACTCGGAACAGGAAGTCGAGAAACCGCAGCCCCAGCAGACGGAGAGCTTGATTTGAGCTTTGCAAAGGAAGCATATGTAAAAACACCCACAAATAAACACCACATTTATAAGAAGCTGTGCACATAACAgcttaaatacagtaaaacaaaatatactgtcACAACACATGATGGATAATAGCCTTGATTTGAGCTCTGTTGTCTTACTTGCAAGATATTATTTctgaattttgttttgtgctgaatttactttttttaaaggagtTGGTGGGGATGTAATTGTACcattaattatattactttgacatatatacatgcatatattttctataattaGTTTGGGCCGAAGGAGTATTGTTCTGTGACATATTTTCATAATCTTTCATTTGTATATGTTCTGCATTATCACATAGAATCCATTCCTACCTCTCTTCTAAAAGGTCTGAGTTACATGATGGTTAACATTCGGATCGTGTTTAGATAATTGAAATAATGCGGTTCATTAATAAATCTCAAGCACAgccttaaagaaataaaaaaaataaaaataaaatgctgttcgGGATCCACATTGCTGATAGAATGGAAGGAGCaatttaaaatggcttttatAACCCACACAGTCCAGATAAGATTCTGTAACTATTTTATACAGTGCTGTTGACAACATATTTGTAAGATATGTAACAACCACctttacatattcatattaacaTTACTAAAAGAACAGAGGGTATGTCTTCTTacctgaaaacaagaaaaataaatcagttcaGCAGAGCATGTATTGCTTGGTGTCTTTCATTGTCTACAGATCGCAGATGATCACAAAAGGTCCTACCCTATCTTGCAGCTCCCCCTGTTGAGGCTAATATACAGTCCTGATAGTATTAGaatcaagaaacaaaaataacacaatgcattttatcGTCTGGTTtgtcaacattttcttttacccgacaaagtatttaaatgttttcacttttgtttgttttgaagcacACTTCTTTTGCAAAGTTGCAGCTCTTTGAATCCCTGTTCTTTGTTGTAAGACATGTATCCCATGTTGGTTGTGCAAGTTCCCATTTACTGGAGCTCAGTTCTCAGTGTCTCCACTTGCATGCAAGGGTTTGCAGTTGTGCCTATTAAGCAGTGAAGTGGGAGAGgtccaaataaacaaatctatattCTTTTGTAAAAGccaaatataatttgtaatactGCCGCCAGTATATCAACAAGCAGACttttgagtttttgtttcttttgtttttgcactcCACACAATTGcaatacatattacatacattaaatacaaatgagaaGACTGACGTTTTGATCTATAACAGGCCTGTTGAGAGCTCCTTTGTGAAGTAAGATTACTTGCTTTGAACTGTTATGTTTCATAAACCCGCTTTTATTACTGCAATACCTGATTTTCAAATGCTGGacaaaagtgaaaaagaaacgattgtatataaattattaaattcaaataatacTTAAGAAGGAATTTCTGCCAATGGGGGAAGTTAcgtaaaaattataataattgacaTCTTAATCTGGTctgtttatcttattttatgtaaaacacTTTGTTTCATCAATTTGTCAAATCTATATTTCCGGTAGAAGGTGTTGTGTTgttgggaaataaaaaaaaaacgtgattGACTTATATAATGCTATACATCACATAACACTtctaaataaagcaatacaagAAGGTTCTCTAATATCAGGAAATGTTTGATTTGCTACATAAGTGGACAACTATTACTTTCACCTAATGGAGTACAGTGTAGTATTATTCAACAGTTACAAGATCAAATACTATGTTAATAGTTCAATGTATTAAACTTGTGGTGTTCATATATCAAGGGGGGTATGCAAAACTTGTTATACTAATAAACGGAAAAGAGTGCACTGG

Function

GO: NA

KEGG:

id description
K23687 RIN2_3; Ras and Rab interactor 2/3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187924 lncRNA upstream 148326 9561557 ~ 9573564 (+) False AMCG00000281
TU187903 lncRNA upstream 206290 9514822 ~ 9515600 (+) False AMCG00000286
TU187853 lncRNA upstream 235209 9483359 ~ 9486681 (+) False AMCG00000285
TU187785 lncRNA upstream 436739 9280063 ~ 9285151 (+) True G149253
TU187686 lncRNA upstream 705739 9013371 ~ 9016151 (+) True G149172
TU188022 lncRNA downstream 210705 9957713 ~ 9962571 (+) True G149416
TU188017 lncRNA downstream 226040 9973048 ~ 9975172 (+) True G149415
TU188070 lncRNA downstream 274414 10021422 ~ 10021853 (+) True G149450
TU188079 lncRNA downstream 282686 10029694 ~ 10030786 (+) True G149454
TU188081 lncRNA downstream 287566 10034574 ~ 10035072 (+) True G149455
AMCG00000283 mRNA upstream 16441 9688747 ~ 9705449 (+) True AMCG00000283
AMCG00000281 mRNA upstream 130802 9573189 ~ 9591088 (+) True AMCG00000281
AMCG00000280 mRNA upstream 161414 9557518 ~ 9560476 (+) True AMCG00000280
AMCG00000286 mRNA upstream 175479 9515369 ~ 9546411 (+) True AMCG00000286
AMCG00000288 mRNA upstream 212966 9501693 ~ 9508924 (+) True AMCG00000288
AMCG00000293 mRNA downstream 81081 9828089 ~ 9840429 (+) True AMCG00000293
AMCG00000294 mRNA downstream 117979 9864987 ~ 9876944 (+) True AMCG00000294
AMCG00000292 mRNA downstream 164128 9911136 ~ 9920082 (+) True AMCG00000292
AMCG00000306 mRNA downstream 255713 10002721 ~ 10010111 (+) True AMCG00000306
AMCG00000307 mRNA downstream 316803 10063811 ~ 10072297 (+) True AMCG00000307
TU187550 other upstream 1140778 8579717 ~ 8581112 (+) False AMCG00000249
TU187300 other upstream 2359183 7359278 ~ 7362707 (+) False AMCG00000217
TU187301 other upstream 2359183 7361020 ~ 7362707 (+) True AMCG00000217
TU187267 other upstream 2425226 7290666 ~ 7296664 (+) True AMCG00000216
TU188032 other downstream 222316 9969324 ~ 9970801 (+) True G149424
TU188165 other downstream 787582 10534590 ~ 10535137 (+) True G149525
TU188404 other downstream 2235452 11982460 ~ 11985715 (+) False AMCG00000352
TU188603 other downstream 2932662 12679670 ~ 12727903 (+) True G149859
TU188861 other downstream 3943831 13690839 ~ 13692589 (+) True G150069

Expression Profile