RNA id: AMCG00000286


Basic Information

Item Value
RNA id AMCG00000286
length 4050
RNA type mRNA
GC content 0.59
exon number 23
gene id AMCG00000286
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 9514822 ~ 9546411 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATCGAGCCCGCCGCCGAAGGACCAGTCGGGGCCGATGCGGACAGTCCGGCCCCGTCCCCGGCAACGCGAGGAGCCGCCACAGCCGCAGCCATGCAGCCGCAGCCGATATACGACTTTTCCAGCGAGGAGAACAGTCCCAAATGGAGAGGCCTCTTCGTGCAAGCACTGCGAAAGGTACAGCTCCAGGTTCATCCCAATTTGTCAGCCAAAGAGGATGCCCTTCAGCACATTGAAGAGCTGATTCTGCAGCTGTTGAACATGCTGTGTGTCGCTCAGCCACGCACCGTCCAGGATGTTGAGGAACGTGTCCAGAAGACCTTCCCCCATCCCATCGACAAGTGGGCCATCGCCGACGCTCAGTCTGCCATTGAGAAACGCAAAAGGAGAAACCCTCTGCTGCTGCCAGTTGACAAAATCCACCCTCTGCTGAAGGCAAGTCCCGCAGGCAGGGCTGAGGTCCTCGGATACAAGATCGACTACCACGTGTCTCTGTACATCGTGGCTGTGCTGGAGTACATATCCGCTGACATCCTGAAGCTGGCAGGGAATTACGTGGGCAACATCAGGCACTATGAGATCAGCCAGCAGGACATCAAAGTCTCGATGTGTGCAGACAAGGTGCTGATGGACATGTTTGACCAGGACGAGGACATTGGGCTGGTGTCTCAGTGTGGTGACGAGCCCTCGTCCACCGGCGAGCTGACCTACGATGACCTGGTGCGGCTGGAGATAGCGGAGGAGCGGCAGTACCTGCGGGAGCTCGACCTCATCATCAAGGATATCGAAGTGATCTTTAGCAACATCCTGGACATCCACGAGCTGACCGTGAAGCTGCTGGGGCTGATCGAGGACGCAGTGGAGATGACCGCGGACGGCAGTCCTCACCCTCTGGTGGGCAGCTGCTTCGAGGACCTGGCTGAGGAGCAAGCGTTTGATCCCTATGAAACCCTGTCTCAGGATATCCTCTCCCGGCAATTCCATGAGCACTTCAGCAATCTGATGGCCAGGCCCGCGGTGGCCCTGCACTTCCAGTCAATAGCAGAGGGCTTCAAGGAGGCCGTGCAGTACGTCCTGCCACAGCTCATGATGGTCCCAGTCTATCACTGTATGCACTACTTTGAACTGCTGCAGCAACTACAGGAGCGCAGTTTGGACCAGGACGACCAGGAGTGTCTGAAACAAGCCATCACTGCCCTGCTGAATCTGCAGTGCAGCGTGGAGCGCATCTACAGCAAACACCTGCCCCGCCGCAAGCCTGGGGAGCCCATGTACCGCCTATACAGCCGGCAGGTGCGCAGCAAGCAGTTGGCCATCAAGCGGATGAACGAAATCCAGAAGAGCATCGACGGCTGGGAGGGCAAGGACATCGGGCAGTGCTGCAGCGAGTTTATCCTGGAGGGCCCGCTGTGCCGCGCCGGCGCCAAGCACGAGCGCCACATCTTCCTGTTCGACGGGCTGATGATCAGCTGCAAGGCCAACCACGGGCAGAGCTCGCGGCTGCCGGGCGCGGGCAGTGGGGCCGAGTTCCGGCTCAAGGAGAAGTTCGTGCTGCGGAAGGTGCGCATCGCCGACCGTGAGGACACGACCGAGCTGCGCCACGCCTTCGACATCGTGAGCAAGGACGAGAACTGCGCCGCCTATTATGCCAAGAGCGCCGAGGACAAGAGCGCCTGGATGGCGGCACTGGTCACCCTGCAGTACCGCAGCACTCTGGACCGCATGCTGGACACAGTGCTGCTGCACGAGGAGCAGGCCCAGCCCCTGCGGCTCCCCTCGCCCGAACAGTACCGCTTCGCCGTGCAGGACTCCGAGGAGAACATTGTGTTCGAGGACAACATCCAGAGCAAGACCGGCATCCCCATCATCAAGGCCGGCACTGTGGTCAAGCTCATTGAGAGGCTCACCTACCACATGTATGCAGATCCCAATTTTGTACGTACCTTCCTGACAACATACCGTTCGTTCTGTAAGCCTCATGAGCTGCTCAACCTGCTGATAGACAGGATTGAAATCCCGGAACCCGAGCCCTCCGAGGCCGACCGGCAGGCCCTGCTGAACGGGGAGCAGCCGATGGCAGCCGAGCTCCAGAGGTTTCGCAAGGAGTACGTCCAGCCCGTGCAGCTCAGGGTGCTGAATGTGTTCCGGCAATGGGTGGAGCATCACTTCTATGACTTTGAGACGGACCCTGAACTCCGGCACAGACTGGAAGACTATATCGGCAGTAAAATTCTGCTGCGAGGAAAGTCCATGAGGAAGTGGGTGGAATCCATCAGTAAAATCATCAAGCGGAAGATGCAGACCCAGTCCAATGGAGTCATTCACAGCATCACCTTCCCCATCCCGCCCCCTCCCATCGAATGGCACATCAGCAGGGCAGGCCAGATCGAGACCTTTGACCTCATGACCCTTCACCCCATTGAGATTGCACGCCAGCTCACATTGCTGGAGTCCGAACTCTACAGGGCTGTCCGCCCCTCTGAGCTGGTGGGGAGTGTCTGGACTAAAAACGACAAGGAGAAGAACTCCCCTAATCTGTTCAGGATGATCCGACACACCACCAACCTCACGCTGTGGTTCGAGAAGTGTGTTGTGGAGGCGGAGAACGTGGAGGAGAGGGTGGCCGTGTTCAGCCGTATCATCGAGATCCTCCAGGTCTTTCAGGAACTGAACAACTTCAACGGTGTCCTGGAGATCGTCAGCGCCATCAACTCCGTGCCAGTCTACAGGCTGGACCACACCTTCGAGGCTGTGccagagaggaagaagaaaatctTAGAGGAAGCTGTAGAACTCAGTCAAGACCATTTTAAGAAGTATTTAGCAAAACTCAAGTCAATAAATCCACCTTGTGTGCCTTTCTTTGGTATATATCTCACCAATATCCTGAAGACAGAAGAAGGGAACCCCGACTTCCTGAAGCGACATGGGAAAGACCTGATCAACTTCAGCAAGCGGCGGAAAGTAGCGGAGATCACAGGGGAGATCCAGCAATACCAGAACCAGCCTTACTGCTTGAAACAGGAGCCAGATATCAAGAAATTCTTTGAAAACCTAAACCCAATGGGGAATATGAGTGACAAGGAGTTCTGCGACTACCTGTTTAACAAGTCCATGGAGATCGAACCTCGAAACTGCAAACAGCCTCCCAGATTTcccAGGAAGACCTTCTACACGCTGAAGTCTCCGGGGATCCGTCCTGTGCGCCACCCCTCTACCTCAGGCACCCTGAAGGGCCACCCCGTCCCCCTGGAGAGAGAGCCCCCCCATAAGATCACCTTCCGCAGCATCGCCGAGGCCGAGCCGGAGAGCACCTTATCAGTGCCCACCTCGCCCTGCACCCCGCCGCAGTCCGCCTGCTCGGACCAGAGCAGCGTGTTCCTGGACTCCGACCTGAACAGTTCCTGGGGTGGCAATAGTATCTTTGCTCCGGTTATCCTGCCACCATCAAAGTTCCACTCCATGTCGTGCGGCAGTCTCCACCAGCTCAGCGAGGAGCTGCTCAAGCCGCCCCCACTCCCGCCCCGCAGGAAGGACATCTCAGAAGCCAAGATGGGCCCCAGCTCGGACAGTCCTCCAGCCATCCCTCCAAGACTGCCTCCGCCGCTGCCAAGAATCCAGCCCAGAGTGCCGGTCCCCAATGGCCCGAGCGACGGCCCCCTGCCCAGCCcgccccctccacccccccggGACCCTCTTCCTGACACCCCGCCCCCTGTGCCCGTGCGCCCTCCCGAGATCTTCATGAACTACCCCCTGAACCTGCAGCCCTCCCCCGTGGGGCGCTTCCACTGGGAATTCAGCTCCTCGCCCAACTCGCCCAACTCCCTGCCGGGCTCGCCCTCCCCGCGGGTGCCACGCCGCTGCTGCCCCCTCAGCGCCAGCCAGAACAGCCTTCACCACCCTCCAGCTCCAGCCATGGCTCCTCCCGTGCCTCCGCGGCAGAACTCCAACCCCCAGCAGCCCAAACTCCCGCCAAAGACTTACAGGAGGGAACTCCCCAATCCCCTGCCCAGCCTCTCTCTAGTGGAGAGCACAGAGAGCACCCAGTGA

Function

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0003677 DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K03099 SOS; son of sevenless

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187853 lncRNA upstream 28688 9483359 ~ 9486681 (+) False AMCG00000285
TU187785 lncRNA upstream 230218 9280063 ~ 9285151 (+) True G149253
TU187686 lncRNA upstream 499218 9013371 ~ 9016151 (+) True G149172
TU187556 lncRNA upstream 841583 8668980 ~ 8673786 (+) True G149059
TU187553 lncRNA upstream 930402 8584488 ~ 8584967 (+) True G149056
TU187924 lncRNA downstream 15146 9561557 ~ 9573564 (+) False AMCG00000281
TU187938 lncRNA downstream 173536 9719947 ~ 9776988 (+) True G149359
TU188022 lncRNA downstream 411302 9957713 ~ 9962571 (+) True G149416
TU188017 lncRNA downstream 426637 9973048 ~ 9975172 (+) True G149415
TU188070 lncRNA downstream 475011 10021422 ~ 10021853 (+) True G149450
AMCG00000288 mRNA upstream 6445 9501693 ~ 9508924 (+) True AMCG00000288
AMCG00000287 mRNA upstream 14001 9487917 ~ 9501368 (+) True AMCG00000287
AMCG00000285 mRNA upstream 28680 9440061 ~ 9486689 (+) True AMCG00000285
AMCG00000277 mRNA upstream 87827 9414677 ~ 9427542 (+) True AMCG00000277
AMCG00000278 mRNA upstream 103037 9378563 ~ 9412332 (+) True AMCG00000278
AMCG00000280 mRNA downstream 11107 9557518 ~ 9560476 (+) True AMCG00000280
AMCG00000281 mRNA downstream 26778 9573189 ~ 9591088 (+) True AMCG00000281
AMCG00000283 mRNA downstream 142336 9688747 ~ 9705449 (+) True AMCG00000283
AMCG00000282 mRNA downstream 175479 9721890 ~ 9747008 (+) True AMCG00000282
AMCG00000293 mRNA downstream 281678 9828089 ~ 9840429 (+) True AMCG00000293
TU187550 other upstream 934257 8579717 ~ 8581112 (+) False AMCG00000249
TU187300 other upstream 2152662 7359278 ~ 7362707 (+) False AMCG00000217
TU187301 other upstream 2152662 7361020 ~ 7362707 (+) True AMCG00000217
TU187267 other upstream 2218705 7290666 ~ 7296664 (+) True AMCG00000216
TU188032 other downstream 422913 9969324 ~ 9970801 (+) True G149424
TU188165 other downstream 988179 10534590 ~ 10535137 (+) True G149525
TU188404 other downstream 2436049 11982460 ~ 11985715 (+) False AMCG00000352
TU188603 other downstream 3133259 12679670 ~ 12727903 (+) True G149859
TU188861 other downstream 4144428 13690839 ~ 13692589 (+) True G150069

Expression Profile