RNA id: AMCG00000288


Basic Information

Item Value
RNA id AMCG00000288
length 2796
RNA type mRNA
GC content 0.51
exon number 10
gene id AMCG00000288
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 9501693 ~ 9508924 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCAAGGGTGGTGTTGTGAAAGGAACAGGCAAGCCGCTCAGGTGTTGCGCTCGGTGCCGGTGTGTGCAGGCGGCCTCCTgtgctctctgtctgtccccgCTGTGCACGGCTCTCAGCTGCGGTAATGATCCGATCTGCCCGCAGCATCGCAGCCTCTGTGGCGTTTCTTACAAGACCAAAACATAAGTCTACGGTGCAATGCATCCTTAACAGCACTATCAGGCACAGCTCCTATGATGTGGCAGTGGTGGGGGCTGGCATCGTGGGGCTGGCCACGGCGCGGGAGCTAATCCTGAGACACCCCTCTCTGAGCTTTATcatcctggagaaggagaaggagctgGCGTCTCACCAGAGCGGACACAACAGCGGAGTGATCCACAGCGGGATTTACTACAAGCCGGGCTCCCTCAAGGCCAAGCTGTGTGTGCGGGGCGCTACCCTCGCCTACGAATACTGCGACAAAAAGGGGGTGCCCTACAAGAGGTGTGGCAAGTTGATCGTGGCGGTGGAGCAGGAGGAGGTGCCCCGGCTGCGGGCCCTGTACCAGCGCGGCCAGGAGAACAGTGTGCGCGACCTCAGGATGATTGACGCCAAGGAGATCCGCGAGAGGGAGCCCTACTGCCGGGGTCTGATGGCTCTGGATTCGCCCTACACTGGCATTGTGGACTGGCGGCTGGTGGCGCTGACCTACGCCAAAGATTTCCAAGATGCGGGCGGTACCGTGCTGACTGAGTTTGAGGCGGCAGACATTGCCATGGTGGCTGAAAGCCCTGCTGGCAgAATGAAGTATCCCATTGAAATCAGAAGTTCAAAgGGCGAGGGGGTGCGGTGTCGCTACGTGCTGACCTGCGGGGGCCTGTACTCTGACCGCCTCTCCCAGATCTCGGGCTGCAGCTCCGAGCCACGCATCGTCCCCTTCCGAGGAGACTACCTGGTTCTCAAGCCCGAGAAGCACTACCTGGTCAAGGGCAACATCTACCCTGTACCTGACCCCCGTTTCCCTTTCCTGGGGGTGCACTTCACGCCGCGGATGGACGGAAATGTGTGGCTGGGGCCCAACGCGGTCCTGGCCTTCAAACGGGAGGGCTATCGGATCTACGACTTCAACCCCCGAGACTTCGCCGACGCACTGAGCTTCAGGGGTCTGCGGAAGCTGGTGTTGAAGAATGTTGTTTATGGGATGGGTGAGATGTACAGAGGCATTTTCATGAGCGCACAGGTGAAACTGCTGCAGAAATACATCCCAGAACTCACGGTTAACGACGTTCTCCGGGGCCCTGCAGGGGTGCGGGCGCAGGCTCTGGACCGCGACGGTAACCTGGTGGATGACTTTGTGTTCGACGGCGGTGTCGGGGCCGTGGGCAGCCGCGTTCTACACGTGCGCAACGCCCCCTCACCGGCCGCCACCTCCTCTCTGGCCATCGGGGAGATGATCGCCGATGAGGTGCAGAGCAGGTTCAGCCTGTAGTCTGTGCTGGTGGCAGTAGCAGCTGTGCAAGCCCCTCCTACTATGCAAGCAAAGGCACCAATCGCAACCCATCCCATCTCTTCTGAAACCCCCCCAATGTGCTGCTGCACTTGCTTGGGGTGGGTTACAAGTCCTCAGAAACTTGAAAAGGAGAAGTCAAGAATAATACTTCAAAAATGACTGGGGTGCAAATGACGTCTCCTTAGGAAATTGTAGTATCCAACCAGCAGCAACTGCAATACTAACACATGAGCCCATAATGGGGAGGCACTCTTCCTTTGTCATTGTTCGCTTCAGTATAATTACTTCTGAATCAGGAAAATTGCATACGATCTATGTTAAATCAAACCAGTTagcacaaataaaaatcaaacttttttttatattgaagaTGCTAGACTTTGCACTTTACCAAGTCTAAAGCTgttgttttcaattacattgTTCCATTTCTTCCGGAACAGGATCTCTCCCGTTCTCCCAATGGAGGTTTTTGTAACTGCTTTGTACCCTCACAACTGAAAAAGACCTCGCTAGGTCTTATTTGGTGCTTAAGTCTGGATTGCTGTGAGCCTGGAAAAGCTTGAAAGCATGATTTGGACGGAAAGTCCCACAGTACAGTGCGCCTGCTCCTTGAACCCAAAACTAGTGCTGCACGCAAAAACCTCATCTGGAAAAGAGACaagctgtttttcatttgaacagGAGGGACCGCTCCCCAGTGGAATTCAGTGATATCCAGAAAGTACAGCTCTGATCCtccagggtgtgtgtgtcatttaccactacaaatgtataattgaatCAACTTTGAAGCTTCCTAGGGTCTTATAAAGGTAATTAGTAAGAAAACCTGCAGCTCAAGAAGACTCAGTTCTGTCTTTCTACCCAAAAGgttatattaattgttttatagtggtttggtttttatttgttgtgttcgTCTTAATCTAAAACCAGCAGCTAGTTTAATTCATAATGCAGCTGTGactctgtgatttattttaaatgtctgtacATATCTTTGGTCAGACAAAGTGTGCTACCTTACAATGCTGCCTTAACTACTCACAGGTGTGTGCATCTTATTCAGAACGAATCCCCTAATGTTTAAAGGGGATGTTCGGGATGTCATTTTCTCAGGATGCAGTGTCTCCTTTACCAAGTGAAGTCTCACTGAAAGTAAATCACATCTGGGCATTTGTAAAGAATCTGTGTACTATAATACCttttggaacaaaaaataatattctcttatttttttctgaaaataaaaccgaTTCTGTACCAGTATTGAgagatttttcaattttgtactgtttttt

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K00109 L2HGDH; 2-hydroxyglutarate dehydrogenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187853 lncRNA upstream 15012 9483359 ~ 9486681 (+) False AMCG00000285
TU187785 lncRNA upstream 216542 9280063 ~ 9285151 (+) True G149253
TU187686 lncRNA upstream 485542 9013371 ~ 9016151 (+) True G149172
TU187556 lncRNA upstream 827907 8668980 ~ 8673786 (+) True G149059
TU187553 lncRNA upstream 916726 8584488 ~ 8584967 (+) True G149056
TU187903 lncRNA downstream 5898 9514822 ~ 9515600 (+) False AMCG00000286
TU187924 lncRNA downstream 52633 9561557 ~ 9573564 (+) False AMCG00000281
TU187938 lncRNA downstream 211023 9719947 ~ 9776988 (+) True G149359
TU188022 lncRNA downstream 448789 9957713 ~ 9962571 (+) True G149416
TU188017 lncRNA downstream 464124 9973048 ~ 9975172 (+) True G149415
AMCG00000287 mRNA upstream 325 9487917 ~ 9501368 (+) True AMCG00000287
AMCG00000285 mRNA upstream 15004 9440061 ~ 9486689 (+) True AMCG00000285
AMCG00000277 mRNA upstream 74151 9414677 ~ 9427542 (+) True AMCG00000277
AMCG00000278 mRNA upstream 89361 9378563 ~ 9412332 (+) True AMCG00000278
AMCG00000274 mRNA upstream 138259 9355981 ~ 9363434 (+) True AMCG00000274
AMCG00000286 mRNA downstream 6445 9515369 ~ 9546411 (+) True AMCG00000286
AMCG00000280 mRNA downstream 48594 9557518 ~ 9560476 (+) True AMCG00000280
AMCG00000281 mRNA downstream 64265 9573189 ~ 9591088 (+) True AMCG00000281
AMCG00000283 mRNA downstream 179823 9688747 ~ 9705449 (+) True AMCG00000283
AMCG00000282 mRNA downstream 212966 9721890 ~ 9747008 (+) True AMCG00000282
TU187550 other upstream 920581 8579717 ~ 8581112 (+) False AMCG00000249
TU187300 other upstream 2138986 7359278 ~ 7362707 (+) False AMCG00000217
TU187301 other upstream 2138986 7361020 ~ 7362707 (+) True AMCG00000217
TU187267 other upstream 2205029 7290666 ~ 7296664 (+) True AMCG00000216
TU188032 other downstream 460400 9969324 ~ 9970801 (+) True G149424
TU188165 other downstream 1025666 10534590 ~ 10535137 (+) True G149525
TU188404 other downstream 2473536 11982460 ~ 11985715 (+) False AMCG00000352
TU188603 other downstream 3170746 12679670 ~ 12727903 (+) True G149859
TU188861 other downstream 4181915 13690839 ~ 13692589 (+) True G150069

Expression Profile