RNA id: AMCG00000293


Basic Information

Item Value
RNA id AMCG00000293
length 546
RNA type mRNA
GC content 0.56
exon number 6
gene id AMCG00000293
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 9828089 ~ 9840429 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGAGTCAGGCCTCCTAGGACTGCTTTTTGCACTCTAAGCCTGAAAAGCTTGAAAAATGAGCCAAGTGTGATTAAGTGGCTGATTGGAGACCGGGAGGCCCACTGCAGTGTCACTTGTCCACGCTCTCAGGGGAAGCCCGTCTGTGGCTCTGATGGGCGGAGCTACGACACTAGCTGCGATCTCCAGAGGGCACGATGCAAGGATCGCTTGCTCACTATGGCCCATCGCGGCCGCTGTAAAGaaaaaaattgGGTTCGTATCGATCAGCCAGCTGCTGTCTCTCCAACAGCATCCGTGGATGGGAAGGACCGGGAGCTGGGAGATGCAGGGGTGACAAAGTGCCGAGCAGAGAGGTCCCAAGCCCTGGAGCAAGCAAAGAGGCCACAGGAGTCCATCTTTGTCCCAGAGTGCAACGATGACGGCTCTTTTGCACAGgtgcagTGCCACACGCTGACTGGTtactgctggtgtgtgactCCGGATGGGAAGCCAGTAAGCGGCTCCTCGGTGCAGAACAGGACACCGGTGTGTTCAGGCTTTTGA

Function

GO:

id name namespace
GO:0008454 alpha-1,3-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187938 lncRNA upstream 51101 9719947 ~ 9776988 (+) True G149359
TU187924 lncRNA upstream 254525 9561557 ~ 9573564 (+) False AMCG00000281
TU187903 lncRNA upstream 312489 9514822 ~ 9515600 (+) False AMCG00000286
TU187853 lncRNA upstream 341408 9483359 ~ 9486681 (+) False AMCG00000285
TU187785 lncRNA upstream 542938 9280063 ~ 9285151 (+) True G149253
TU188022 lncRNA downstream 117284 9957713 ~ 9962571 (+) True G149416
TU188017 lncRNA downstream 132619 9973048 ~ 9975172 (+) True G149415
TU188070 lncRNA downstream 180993 10021422 ~ 10021853 (+) True G149450
TU188079 lncRNA downstream 189265 10029694 ~ 10030786 (+) True G149454
TU188081 lncRNA downstream 194145 10034574 ~ 10035072 (+) True G149455
AMCG00000282 mRNA upstream 81081 9721890 ~ 9747008 (+) True AMCG00000282
AMCG00000283 mRNA upstream 122640 9688747 ~ 9705449 (+) True AMCG00000283
AMCG00000281 mRNA upstream 237001 9573189 ~ 9591088 (+) True AMCG00000281
AMCG00000280 mRNA upstream 267613 9557518 ~ 9560476 (+) True AMCG00000280
AMCG00000286 mRNA upstream 281678 9515369 ~ 9546411 (+) True AMCG00000286
AMCG00000294 mRNA downstream 24558 9864987 ~ 9876944 (+) True AMCG00000294
AMCG00000292 mRNA downstream 70707 9911136 ~ 9920082 (+) True AMCG00000292
AMCG00000306 mRNA downstream 162292 10002721 ~ 10010111 (+) True AMCG00000306
AMCG00000307 mRNA downstream 223382 10063811 ~ 10072297 (+) True AMCG00000307
AMCG00000297 mRNA downstream 252564 10092993 ~ 10100250 (+) True AMCG00000297
TU187550 other upstream 1246977 8579717 ~ 8581112 (+) False AMCG00000249
TU187300 other upstream 2465382 7359278 ~ 7362707 (+) False AMCG00000217
TU187301 other upstream 2465382 7361020 ~ 7362707 (+) True AMCG00000217
TU187267 other upstream 2531425 7290666 ~ 7296664 (+) True AMCG00000216
TU188032 other downstream 128895 9969324 ~ 9970801 (+) True G149424
TU188165 other downstream 694161 10534590 ~ 10535137 (+) True G149525
TU188404 other downstream 2142031 11982460 ~ 11985715 (+) False AMCG00000352
TU188603 other downstream 2839241 12679670 ~ 12727903 (+) True G149859
TU188861 other downstream 3850410 13690839 ~ 13692589 (+) True G150069

Expression Profile