RNA id: AMCG00000323


Basic Information

Item Value
RNA id AMCG00000323
length 4885
RNA type mRNA
GC content 0.47
exon number 2
gene id AMCG00000323
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 11704595 ~ 11714618 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTAATGTGTCTGTGTTCCTCTGCAGTGTGGGACGGTCCTGAAGAAGTTGTTCCCTGCATCTGGCTTGGGGCCCTGTGCAGCCATCGTACGGGAGGAGGAGCCCGGTGCCTTGAGGAAATGTGAATATATAATGAGTTTCTGCAGAGCTGCCCCCTACAGGGAACCACGGAACCCTGCAGCTCCCCCCACACAGCACCCTGCCCGGCGgtttgcAACTATGCACGTCAAGCCATATCCCAAATTTCAAAAGAAAGAGCTACAGCTGGAAACGAGCCAAGACAACCTAAGAGGCCTTCACTCGAGCCAGCCAGGGGTACTGAGGACAGACAGATGTGCAAACACCTGCACCAGCCGTCAGCCCTGCTCTCTGGGGGGGGTGCCTAGCAATGGGACGACCAATCGACGTCCTTTTGGAGTTATATCCACAAACACTTTCTGCAACAGCCCCGGCCCTAAGATCAACACTGAACCTCCGAGCTGCCGAGGGAAGAAGAGCAAGGTGTCGGTGGTGAACTCGCTGACCGGGTccttgctgctgctgtcctccaCGTCGGTCAGCGACGACTCCCTCACGCTccaggaggaggaaggagaggggcCTCTGGATATCTGGGCAGTGATCAAGCCCGGGAACACCAAGGAGAAAATTGCCATCTTTGCTGCCCATCAGTGCAATAACTCCAATGGCAGCGGCAGTGTCAGTATTGGGAGCAGTGGGAGCAGCAGTAGCAGCCGAACAATCTCCATGAAAATTAAGGGTAGCTGGGAAGTGGAAGGGTCTGTCGCCAAACGCAGAAAAAGATCTGCAGGCCCTGACAAATCCAAGGCCCCAGAGCAGCATCCGCCCTCTAGGACAAGGGACTGTGGGACAAAGGTGGCTGCAGTAAGGTGTCTTCCCTGCAGTGACAGGGGGGAGCAGTCCTACACAGTGGTCATTGAGGGGGAGAAtgtggaggaaggggaggagggagggaaaacACTCTCTGTTGTTGAGATGGTGGCCTACCTGGAGCAGAGGGCCAACGCCCTGCACATGGACTGCACTAAGCCAAGCTTGGTGCGAGGCTCGGGCTGCATTGTGCTGTCAAAGGAGCAGCAAGGCGGTGTAGTTCCTGAAGATCACAGGAGCCCCGAGGAGATGCAAGGAGAGTGTGTGAGGGTGCTGGACATGGTGGCCAAGCTTGAATCCGAGTGCCTGAAACGTCAGTGCGAGAGGGAGGCGGGCGGGCTGTCGCGCAATAACAGCCTTCGCAGGAATGTGGGGAGAGTATTGCTGGCAGTTGGCGAGTCTTCCCCACTTCCCTCACAGGAACAGGCAGACCATGAACCCTCACCTCAAAAGGACAATCTGGAAGAATGTTCTGCTAAGAGGAACACAGGCAGAGACACTAGCCCACGGGGTCACTGTGAAGTGGCTCCTTCTGAAACTGCTATTGTGGTCTATAGGGAATCTAATGGGTGTGGAGTATTTATTGCTGAGGAGTCCAGTACCTTGGATAGCAGGGTTAAGAGCAACGAGGACTCTGGTGATTTGGCGAGACTGGGACAGCAGGAGGCAGCCTGTGCTGGAGTGTCACCCTCCCTCAAGGAGGCCGACTTGAGCATCTCAGCCGGGCTACAGCAGGAGACGCGGACGGAGGACGAGCCCCACGCTGGCTACCGTGAGGAGCCGCTTCCGGGGATGCTGTTTTTCAAACAGACTTCAGCGTCGCCTGCAAAGGACCAGGTCTCGCACTCGGCACAAGAAACTGCACCCAAACCTGAGGACGACGGCACCTCTGCACAGCCCACCGATCCCACCCTGGACTATACCAGGGCTGAGGACACCCCGAATACTCCCGTGGAGGAAGAGAGGTATGCAGGTCAGGAGCGTTTTCCTTTCCCTATGAGAAAGCTGGTTTCTCATGACTTCCTGGAGGCGCGCTTCAAGATCCAGCAGCTGCTGGAGCCTCAACAGTACATGGCCTTCCTGCCTCACCACATCATGGTCAAGATCTTCTGCTTCTTGCCCACCGAGACGCTCGCAGCCCTGAAGTGCACCTGCCACTACTTCAAGTTCATCATCGAAAGCTACAACGTGCGGCCGGCCGACTCGCGCTGGGTCAGTGACCCTCGATACAAAGACGACCCCTGCAAGCAGTGCAAGAAGCGCTACGGCCGAGGCGACGTCTCCCTCTGCCGCTGGCACCACAAGCCCTACTGTCAAGCGTTACCCTACGGACCAGGCTACTGGATGTGCTGCCACGGCTCCCAGAAAGACAGCCCTGGCTGTAACGTGGGGCTGCATGACAACCGCTGGGTGCCCGCCTTCCACAGCATTAACATGCCAATGTACAAGAAAGTGCGGGACACTGAGGAGGACTCTTAGGTGGGTCTGCCAGGGGGTGCTTTTTAATCTAGGGCTTTttgcgtgtgcgcgtgtgttAGATTGTGAACAGGTTGCTGACACTAATGTGGAATCACTGGATCACTTCCCTCTGGTCAGGAGGTTCAGAATGGTGATCTCTCAATTTATGTGAATATTTCTGTTAAACagtaacaaacataaaaaatgtgattCCGCCATTCTCATGGTCACCCCTCAAAAACACTCTGATATTTTGAACAAACTGAGACTTTTCCTCGGAGGAGAATATCGGCATGTCATCATCAGGACTCCTGAGTTGctgaattttgttttacttttggtactggCGCTTCCTTCTTTTCAAAGAGCattgaattattataatttgataaattatactattataatTTCAGTAATCCTTTAAAGCTTGTTTACAGATCTGATGTGAAAATGTCATATTGTTCCTGAGCAGTTCTCCTAACAGACTACTAaaccagatttgttttcttcaatgtaAACCTGGGCCAGATAGATGTAATGCATACTTGATGTGCTTCACATTTATTGTACTTGGTTTACATCCATTATAGTACTAGGGAAATGCTGATGAATGTGCTGGTATTGacaaatgacacaaaacatTTGAGAAATTCCGACTGTCATCAGTTACGAATATCAGTAGTTAATTTCCCTTATACAAACTTCTATACATCAATGAATGATTCTTTAAAAAGAGCTGTAATGTgaatctaattttttttttttttttttatacatactaTATAATCTGCTAAAAAAATATCAGCTTCCTCCTCGAGGGGCCTGTCTTGACCAGTGATGGGAAAGTTAGTGTGACAACCTGAGGTTTTCATTGAGTGACTGGAGAATGATTCTAGCCCTGTTGTTTACAATGTATATAATACAGAATCATATCAATCCATACAGGGTGAGGAATGATGCATGCACAGTACTTGAGAAAGCATCTACCTTCAGTGGGTGGAACACACTTTTACCcctgttgtgtatatatttaaaagaaataatcCGAGTTGTACTATAGAGCTGGCGTAGCCTCTTAACCTCTACAATGCAGCTGTCCTAGCTTTGCAagttagtgttttttgttttacatgttttttttttcttttttaaagcgTTATTATCCCATGTGTAATCTGTTTCTgaagggaaacatttaaatatggaGAAAGAGAACTCAGTTCTGTTCTTTATAATGGCTTAAACTGGACATCTTCTGAAAAATCAGGATTTCTAAAATGGACAATTAAACCCAAGAGCAAAGacaagacaagaaaataaagattttaaagcattattgtACAATGACCCCGTTATAAGAGCATAATTGTTTCTGCCTGTATAGGCATTTTACTTCAATAAAGTGTGCATTCTTAGGCGTTGTCAGCTATTGTTTTGGTGCTGCTTCATGCTTTCTTCACtgtctcttgttttgtttctcaaattGTTAAACCAAAACGTGGTCATGGTAAATAAACAGTGAATTTTCCCATGAACGATGAGCATTTTAAGAAGCAGTCCTCGTGAGGATCCCTGTACAGAGAAGTGAGAGGTTTAACTCGCGTACCCAGAGTGAAGGACTTGACTCCAAATCCTAATCTGCTTTTTAGACAGCTGTCTAAAATAAAGAGCATTAAAACCTTCCAATCTGATGTGATTgattaaatttaataaatggAGAGGGTAGACCTCCCTACACTGGGTATTAAAATGGGTAACTGCACGAGGGTGGGAGACGTCCCTGTGATGTTTTGAGTTTAGTGGCCTTGTAaaaccactgcacatttttctactGCTTTCACCAAGCACGTTTTCGGAGCCCCAGCTCGGCCTGGAGGGACACAGGGAGCGACTTCGTTCTGCCTCTCCAGGAGGGTTCGGGAGGTTTTAGAGGGCTGTGTGTGAAGCTCACACTGCTCATGTTGTATTGAACTGACTCTTGGAGGTTAAAATGGTTACAATcaatcactttatttttatttttccccccttttaaGCACTCAAGCTAgtcacaggaaaataaattgcaaatttgGGATTGGGTTTTAATATTCCAGAATCTACCCttcacagaaatgcaaaatgaatatatatttttaatcaatcgCTGTTTAAATAGGATTCTAATATACCTAAAACAGAGGATTACACACTgggtgtaatatatatatattttgtaaccgCAAGATTATCTTTTCAAGAACAGGCCCTGGCATGCATACTTCTCAGTTGTGAAGTCTGCCAACCTTTCTTATTCTTGCTTTTGGTGTGTTTTGGATCACATTGTAAGACTGAATTGTGCGGGGTGTTTTCTGTGTTCGTGTATCTGCGCACTGCAGAGTGAGAAAACGACATGCTCGACTTGTTTCTGTAATGTACCTTTGGGAGTTCGCCCTACCTGCTTATCAGTTTGAAGTCTTATCTTTGAATTCAACCACATCATTGAGATAAAAGCAGATCATATTTACTCTTATGAATAAGGAttgctgaataaaaaaa

Function

GO: NA

KEGG:

id description
K10311 FBXO34; F-box protein 34

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188253 lncRNA upstream 266776 11437369 ~ 11437819 (+) True G149602
TU188245 lncRNA upstream 336370 11338391 ~ 11368225 (+) True G149595
TU188242 lncRNA upstream 363026 11338391 ~ 11341569 (+) False G149595
TU188238 lncRNA upstream 378044 11326186 ~ 11326551 (+) True G149591
TU188233 lncRNA upstream 481488 11222829 ~ 11223107 (+) True G149587
TU188344 lncRNA downstream 72475 11787093 ~ 11791091 (+) True G149666
TU188345 lncRNA downstream 77253 11791871 ~ 11792096 (+) True G149667
TU188346 lncRNA downstream 78749 11793367 ~ 11794856 (+) True G149668
TU188350 lncRNA downstream 82757 11797375 ~ 11798007 (+) True G149672
TU188351 lncRNA downstream 84943 11799561 ~ 11799878 (+) True G149673
AMCG00000326 mRNA upstream 16116 11685554 ~ 11688479 (+) True AMCG00000326
AMCG00000325 mRNA upstream 24897 11677153 ~ 11679698 (+) True AMCG00000325
AMCG00000327 mRNA upstream 29908 11672207 ~ 11674687 (+) True AMCG00000327
AMCG00000350 mRNA upstream 133366 11570345 ~ 11571229 (+) True AMCG00000350
AMCG00000315 mRNA upstream 471580 11221715 ~ 11233015 (+) True AMCG00000315
AMCG00000324 mRNA downstream 17778 11732396 ~ 11734499 (+) True AMCG00000324
AMCG00000332 mRNA downstream 122175 11836793 ~ 11839680 (+) True AMCG00000332
AMCG00000353 mRNA downstream 151537 11866155 ~ 11886897 (+) True AMCG00000353
AMCG00000352 mRNA downstream 250937 11965555 ~ 11995026 (+) True AMCG00000352
AMCG00000351 mRNA downstream 319513 12034131 ~ 12041923 (+) True AMCG00000351
TU188165 other upstream 1169458 10534590 ~ 10535137 (+) True G149525
TU188032 other upstream 1733794 9969324 ~ 9970801 (+) True G149424
TU187550 other upstream 3123483 8579717 ~ 8581112 (+) False AMCG00000249
TU187300 other upstream 4341888 7359278 ~ 7362707 (+) False AMCG00000217
TU188404 other downstream 267842 11982460 ~ 11985715 (+) False AMCG00000352
TU188603 other downstream 965052 12679670 ~ 12727903 (+) True G149859
TU188861 other downstream 1976221 13690839 ~ 13692589 (+) True G150069
TU189044 other downstream 2418520 14133138 ~ 14153840 (+) True AMCG00000412
TU189714 other downstream 5221375 16935993 ~ 16938282 (+) True G150750

Expression Profile