RNA id: AMCG00000324


Basic Information

Item Value
RNA id AMCG00000324
length 885
RNA type mRNA
GC content 0.59
exon number 7
gene id AMCG00000324
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 11732396 ~ 11734499 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGTACCTGAACGAGGCAGTGCCATATTTAAGTTCACCTCCGTCTCCTCTGGCTTTCTATCGGGACTGGATCGGCCCAAATAAGCCCTGTATCATTCGCAATGCCTTCAACCATTGGCCAGCCCTGTCCAGGTGGAACCCATCTTACCTCCGGGAGGCGGTGGGCTCCAAGGAGATCAGTGTGGCGGTCACTCCGCATGGCTACGCGGACGCGGTGTACGGCCATCGCTTCGTCATGCCCGAGGAGCGCCGCATGCCCTTCGCCTCGGTGCTGGACATCGTGGAGCACAAGGGGGAGAGGACGGGCGTGTTCTACGTTCAGAAGCAGTGCTCGAACCTGACCGAGGAGCTGCCCGAGCTCACCGGGGACCTGGAGACGGACATCCCCTGGATGAGCGAGGCCCTGGGGAAGCAGCCTGATGCTGTGAATTTTTGGCTGGGAGAATCCACTGCGGTGACATCGTtgcacAAGGACCACTATGAGAATCTGTACTGCGTGATCTCAGGAGAGAAGCAATTCATTCTCATCCCCCCCTCAGACCGGCCCTTCATTCCGTACGAGCTTTACCAGCCAGCCACGTTCTGCCAGAGAGAGGATGGCACTTTCGATGTGGTGGATGAGCCGAATACTGAAAAGGTGCCGTGGATCCCTGTGGACCCTCTGAACCCCGACCTGCAGCGCTACCCCAACTACAGCCTGGCCCGCCCCCTGAGCTGCACGGTGAAGGCTGGCGAGATGCTGTACCTCCCCGCGCTGTGGTTCCATCACGTCCGGCAGTCTCACGGCTGCATCGCAGTGAACTTCTGGTATGACATGGAGTTTGATATCAAGTATAACTACTTCCAGCTGGTGGAGTCTCTGTCCAAGGTGGTGGGCCCGCTGTGA

Function

GO: NA

KEGG:

id description
K19219 JMJD7; peptidyl-lysine (3S)-dioxygenase / protease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188253 lncRNA upstream 294577 11437369 ~ 11437819 (+) True G149602
TU188245 lncRNA upstream 364171 11338391 ~ 11368225 (+) True G149595
TU188242 lncRNA upstream 390827 11338391 ~ 11341569 (+) False G149595
TU188238 lncRNA upstream 405845 11326186 ~ 11326551 (+) True G149591
TU188233 lncRNA upstream 509289 11222829 ~ 11223107 (+) True G149587
TU188344 lncRNA downstream 52594 11787093 ~ 11791091 (+) True G149666
TU188345 lncRNA downstream 57372 11791871 ~ 11792096 (+) True G149667
TU188346 lncRNA downstream 58868 11793367 ~ 11794856 (+) True G149668
TU188350 lncRNA downstream 62876 11797375 ~ 11798007 (+) True G149672
TU188351 lncRNA downstream 65062 11799561 ~ 11799878 (+) True G149673
AMCG00000323 mRNA upstream 17778 11704595 ~ 11714618 (+) True AMCG00000323
AMCG00000326 mRNA upstream 43917 11685554 ~ 11688479 (+) True AMCG00000326
AMCG00000325 mRNA upstream 52698 11677153 ~ 11679698 (+) True AMCG00000325
AMCG00000327 mRNA upstream 57709 11672207 ~ 11674687 (+) True AMCG00000327
AMCG00000350 mRNA upstream 161167 11570345 ~ 11571229 (+) True AMCG00000350
AMCG00000332 mRNA downstream 102294 11836793 ~ 11839680 (+) True AMCG00000332
AMCG00000353 mRNA downstream 131656 11866155 ~ 11886897 (+) True AMCG00000353
AMCG00000352 mRNA downstream 231056 11965555 ~ 11995026 (+) True AMCG00000352
AMCG00000351 mRNA downstream 299632 12034131 ~ 12041923 (+) True AMCG00000351
AMCG00000339 mRNA downstream 341557 12076056 ~ 12090893 (+) True AMCG00000339
TU188165 other upstream 1197259 10534590 ~ 10535137 (+) True G149525
TU188032 other upstream 1761595 9969324 ~ 9970801 (+) True G149424
TU187550 other upstream 3151284 8579717 ~ 8581112 (+) False AMCG00000249
TU187300 other upstream 4369689 7359278 ~ 7362707 (+) False AMCG00000217
TU188404 other downstream 247961 11982460 ~ 11985715 (+) False AMCG00000352
TU188603 other downstream 945171 12679670 ~ 12727903 (+) True G149859
TU188861 other downstream 1956340 13690839 ~ 13692589 (+) True G150069
TU189044 other downstream 2398639 14133138 ~ 14153840 (+) True AMCG00000412
TU189714 other downstream 5201494 16935993 ~ 16938282 (+) True G150750

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00023575 False 1234 mRNA 0.44 8 NC_007128.7 10711641 ~ 10738001 (-)