RNA id: AMCG00000327



Basic Information


Item Value
RNA id AMCG00000327
length 1132
RNA type mRNA
GC content 0.61
exon number 3
gene id AMCG00000327
representative True

Chromosome Information


Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 11672207 ~ 11674687 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CGGGATACTACCCTTATCTGTCAGCATTGCGTGTAACACAAGCCCCGAAGTAGCGCAGCTCCAGCACTTCCTGCTGTTGTCTCATTTCATGTACTTTCTCCTGAGCTGCTGGTAACCTTATATCTGACGTCTTCGCAGCGATCCTCTTTCTTACgaCATGGATGACTTTTCGGGTGGCCTGGCTCAGCCCCTGGGGCCCCACAGTTTCCACATTCAGGCCCTTCTGCTCCCCCTACTGGAGGTCCTGGTCAGCCCCCTGCTCCAGGGATGTATCCAGGGGGGGCACACCCTTCAGGCCCAGGTGCACCAGGGCACTTTCCTGGTGGTCCATCAGCTCCAGGACAGTATCCTTCTGGCCCAGCCCCTGGACAATATCCCTCTGGTATTGGAGCACCAGGACAATACTGTGGGGGTCCAGGGCCATATCCTTCTGGCCCTGGGGCTCCAGGGCAGTTTCCCTCAGGTCCTGGGGCCCCAGGGCAAtatcctgctggaggaggagccCCAGGACAAtatcctgctggaggaggagccCCAGGACAAtatcctgctggaggaggagccCCAGGACAAtatcctgctggaggaggagccCCAGGACAGTTCCCAGGAGGAGCCCCAGGGCAAtatcctgctggaggaggagccCCAGGGCAAtatcctgctggaggaggagccCCAGGGCAAtatcctgctggaggaggagccCCAGGACAATATCCTGCTGGAGGAGCACCGGGACAGTTCCCAAGAGGAGCTCCAGGACAATACCAACCTGGAGCTCCTGGCCCATATCCTTCCGGACCTGGAGCCCCATCAGGGCCCTATCCTAACTTTCCCTTCCCTGGTGGACAGCCTCCAACAGGACCTGGTGCATACCCCTCTGCTTCAGGTTCTGGCCCCTACCCTGGCTTCCCTGGAGGATCATACCCTCCCATTCCTCCTGGTTCCTGGGGTCCCCCCAACTCTGGGCCATTCCCAGGCCAGCCTGGCCACCCTGGCCACCCTGGCCAACCTGGCCAACCTGGCCACCCTGGCCACCCAGGCTCTTTTGGCCCAGGATCTGCTGGCCCCTATCCCTACCCCAACCCTTCGTTCGGTGGTCCTCCTGGATCGGGGGGAGTTCTGGTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU188253 lncRNA upstream 234388 11437369 ~ 11437819 (+) True G149602
TU188245 lncRNA upstream 303982 11338391 ~ 11368225 (+) True G149595
TU188242 lncRNA upstream 330638 11338391 ~ 11341569 (+) False G149595
TU188238 lncRNA upstream 345656 11326186 ~ 11326551 (+) True G149591
TU188233 lncRNA upstream 449100 11222829 ~ 11223107 (+) True G149587
TU188344 lncRNA downstream 112406 11787093 ~ 11791091 (+) True G149666
TU188345 lncRNA downstream 117184 11791871 ~ 11792096 (+) True G149667
TU188346 lncRNA downstream 118680 11793367 ~ 11794856 (+) True G149668
TU188350 lncRNA downstream 122688 11797375 ~ 11798007 (+) True G149672
TU188351 lncRNA downstream 124874 11799561 ~ 11799878 (+) True G149673
AMCG00000350 mRNA upstream 100978 11570345 ~ 11571229 (+) True AMCG00000350
AMCG00000315 mRNA upstream 439192 11221715 ~ 11233015 (+) True AMCG00000315
AMCG00000313 mRNA upstream 502265 11147655 ~ 11169942 (+) True AMCG00000313
AMCG00000314 mRNA upstream 540528 11127858 ~ 11131679 (+) True AMCG00000314
AMCG00000304 mRNA upstream 1121293 10549932 ~ 10550914 (+) True AMCG00000304
AMCG00000325 mRNA downstream 2466 11677153 ~ 11679698 (+) True AMCG00000325
AMCG00000326 mRNA downstream 10867 11685554 ~ 11688479 (+) True AMCG00000326
AMCG00000323 mRNA downstream 29908 11704595 ~ 11714618 (+) True AMCG00000323
AMCG00000324 mRNA downstream 57709 11732396 ~ 11734499 (+) True AMCG00000324
AMCG00000332 mRNA downstream 162106 11836793 ~ 11839680 (+) True AMCG00000332
TU188165 other upstream 1137070 10534590 ~ 10535137 (+) True G149525
TU188032 other upstream 1701406 9969324 ~ 9970801 (+) True G149424
TU187550 other upstream 3091095 8579717 ~ 8581112 (+) False AMCG00000249
TU187300 other upstream 4309500 7359278 ~ 7362707 (+) False AMCG00000217
TU188404 other downstream 307773 11982460 ~ 11985715 (+) False AMCG00000352
TU188603 other downstream 1004983 12679670 ~ 12727903 (+) True G149859
TU188861 other downstream 2016152 13690839 ~ 13692589 (+) True G150069
TU189044 other downstream 2458451 14133138 ~ 14153840 (+) True AMCG00000412
TU189714 other downstream 5261306 16935993 ~ 16938282 (+) True G150750

Expression Profile