RNA id: AMCG00000340


Basic Information

Item Value
RNA id AMCG00000340
length 4037
RNA type mRNA
GC content 0.51
exon number 10
gene id AMCG00000340
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 12161991 ~ 12169461 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCGGACCTCAGCGATGCCGGGCGGGCGTGCGGTCGCAGCAGATCGATATCGGGTGGTCTTCAAAGTCTAAACATGTGTTCATAATGACACTGTAGCATTTTATTGTGAGGTTTTCATTGCAAAACGACctatgtattataattgcaTTACGATGTTCTCATTACATATGtaacttttgtgttgtttatttaggAATCTGTTTTAAAGGGGCCGAAGACATGTGttcctcctgtgtgtgtgttactcttCAACGTGGAGTAATTGAACAATGATTGGtctttaacttttgttttttaattgcgtTAATACACGTTAATTTGTGATCTGCTTATTTACAAAACGTCGTGTGATATATGTATTGTCATAagtaatgtttttcattctctCTTTGGGGTCTGTAACAGTATACCCCAATTTCATTATCCATTTAATCTCCCATTCGGCAGACTTGCTATTAATAAGTGTACATCCAAGTGCAACTCATAAGTAGTGTAGGCTACATGTATATGATATGTATTGTACTTTAACGTGAATAAAATATCCTTATAATTAACTTAGAAAAGtgattatatttagatttgaataTAGGGCATTCATAGATTAAACAACAAAGTAGAGTCCACATTGTCTTTAATGTCCCTGGGGTCATACTCAGGTCACTGCCAAGTGCTGGGAAGTACATGAATGCATCCTTTACATATGCTGACCTTTGTTcaattgtgtttttggttgttaCTGGAAGGCTGACTCTTCATGGGAGATGAGACCAGTGATCCGATTGGCTGCAGTGGCTTTGCCTATGGGCGTGCTGCTCTCCAGGACCATGGCGTGGATGTCCAGTGGCAGAACACATGCAGAGCTCGTGACCCGTCTCCGGGATCATGGAGTCATTAAGTCTGATCGTGTGTTTGAAGCCATGCTTGCCACCGATCGTGGGCTCTACACCAAGGACTTTCCCTATGTTGATGCTCCACAGTCCATAGGGTACAAGGCTACCATCAGTGCCCCACACATGCATGCCCACGCCTTGGAGGTGCTGAGCGACAAGCTGACCGAAGGAGCCACTGCCTTGGACGTGGGCTCTGGGAGCGGCTATCTCACCGCTTGCTTCGCCAGGATGGTGGGTTCCTCGGGGAGAGTGGTGGGTGTGGAACACATTGCCGAGCTGGTGGAGGAGTCCATCCGGAATATCCGTCTGGATGACCCTGAGCTGCTCACCTCGGGACGTGTCAAACTCCTTGAGGGAGATGGCCGGCTTGGTTTCCCAGAGGGAGCCCCCTACGATGCCATCCATGTGGGGGCGGCAGCACCTACACTTCCAAAAGCACTGCTGGCCCAGCTGAAGCCAGGCGGGAGGCTGGTCTTGCCTGTGGGCCCCGAGGGAGGCGGCCAGGTGCTGGAGCAGTACGACAGACAGAGCGACGGCACCTTCACCAGGAAGGCACTCATGGGTGTCGTGTATGTGCCCCTCACTGACCAGGACCGCCAGTGGCCCAGATCCGCAAACAAGCAGCGGCTGTTCGTGTTGAACATAAAGTGGTCAGAACTAAACGCGAAGAGCTCGGGGTACAGTAGAGACCCAGATCATGAAATTGACGAAAATCAACATAACAATATAAGTAAGATTCCATTCCAGAAAGCCGGCAGGATTCCACTATTTTATTCTACAAAAGTGACCGAACCAGCCACTACCAGAGCTATCTGGTatcaggagaaaataaaatgtgcttttcttacCCGCTCCCAAGCCACAAATAAACCGAGCCGCTTCTTCCATCACATGAATTCGGGCCGATTCGGGCAAATGGAGACAAATGAATCCGAAGCGAAGCAGGAAAGCGTGAGTGCCGCGGTCGAGCCGAGCGACAGGGAGATCCCTGCAAAACGGAAAAGTGACGAGATCGACGAACCGGGACTCGGCCGCCGCGGAAAGAAGCGCAGAGGCCGAGGGCTAAAGAAGCTTCCCCCGGGGGAGAGGTACGTCCCTCCACCGCAGAAACGAAACCCCCAGGTCAGCTTCGGCCAAGAGCATTTCGACGAGACGAGTTACTACTTCGAGGGAGGTCTCCGCAAGGTGCACCCGTACTACTTCGACTTCAAGACTTACTGCAAGGGGCGGTGGGTCGGGAAGAGCCTGCTGGAGGTGTTCCGCTCCGAGTTCCGGGCCGAGCCGCTGGAGTACTATGAGAAGGCTGCGCAGAAAGGACGGATCCGACTGAACGAGAAGCCGGTTGACAGCCTCAGTGTGATTCTTAAGAACAATGACTTTATGAGGAACAGGATCCACCGCCACGAGCCACCGGTGAGCGCCCGCCCCCTGGAGATCCTGGCGGACGATGGGGAGCTGGTGGTGGTGGACAAGCCGGCCTCCCTGCCCGTTCACCCCTGCGGCCGCTTCCGGCACAACACGGTGATCTTCATCTTGGGCAAGGAGCACGGCCTGAGCGGCCTGCACACCGTGCACCGGCTGGACCGCCTCACCTCCGGGGTGCTGCTCTTCGCCCGCACGCTGGCGGCCTCGCAGAAGCTGGACCAGCTGGTGCGTGACAGGCAGCTGGAGAAGGAGTATGTGTGCCGTGTGCAGGGCGAGTTCCCCGAGGGTGAGATTGTGTGCGAGGAGCCCATTCTGGTGGTGTCCTACAAGGTGGGGGTGTGCAGGGTGGACCAGCGAGGTAAGCCCTGCCGCACGGTGTTCCACAGGCTCAGCTCAGACGGCTGCTCCAGCGTGGTGCGCTGCCTGCCCCTCACCGGCCGCACCCACCAGATCCGCGTCCACTTGCAGTTCCTGGGTCACCCCATCCTCAACGACCCTATCTATTGCGCTGCAGCCTGGGGGCCGGAGAGAGGCAAGGGAGGCGTCACTGGTTTGGATGACGAGCAGCTTCTCAAGGCTCTTGTGGAGGAACACCAGGCCAAGGAGAGCCTGCACCTCCTGGACATCGCTGAGGTAGACCTCCCTGACCACAGTCTGCTTCAGAACAAAGATGTAGGTGGCTGTGGGATGGCTGGAGGTAAACCAGATCTTTCGGTGTCTCAAAAGCAGGCTGATACATGTGTTGGAAAGAGTGATGCTGTAGGTGTCTCTGATATCACTGAAGTAAATGTGGCAGCTTCTAATTTAAACAAGGTTGACTGTTGTATGCTGGACCAGCaacacatgtttttaaaaagtaatgacaCCGAGAGTGCTTGCAAAACAGATGGCAAGTCTGGACGTGATTCAGGCACTAATGGGGTTCCTCCAGGACACGCTCTGGACCGTACCACTGTGGAAGGGAAGTGTAATGAAATGCAAGGTGATCTCACAAAGAACCTGGACTCCGGCGGGGAACTTCCAGTGCAGACCGAATCGGAAGAGGCTGGCACTAAGTCGGACTGTCCCAGTGTGACTGTGGTGAGAGATCCTTTATGTGGGGAGTGTAAGATTGTTCGGAAGGACCCCACGGAGAAGGATTTGGTAATGTACCTGCATGCACTGAGGTATAAAGGACCTGACTTTGAATACTCCACTCGCCTGCCTGACTGGGCCAAGGAGGACTGGCAGGAAGCCTAAAGAGCCCTCCTTACTTTAAAGAGGTCTGTAAGTGGGTCCCCAAGCTTAGATTTTCTGGTTGAAGAAGTATATATCATCCAAccgttttttgtttctttttcttaccCTTTGCTATGACATATGTCTAATATTTCCTTTGGAAATCCCATTAAAATTAGCATTATGGGTGATCATCAGGTACATTGCCAGCTGTATGAAAGTACCTTCAATGTACTTAACACTGTTCAGGTGTTTTatgattggttttattttaaaagcaggccTTTGTGCAGCACAGATTATAtcaacagaatttaaaaaatacagtttttacaTTGATTGCTTTAAATACACCAATTGTTTCCTTAATAAgttcattgaaatgtattacatttgtctGGGTTGTCTTGTGCTCATGGGAGTTTACTTTTCCATGTGTGATGCCACTGTTTCTGGGCATctgtatcaaataaataattgaaaggaaataattttaCTCTCGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188432 lncRNA upstream 63619 12092387 ~ 12098372 (+) True G149747
TU188424 lncRNA upstream 134548 12027227 ~ 12027443 (+) True G149739
TU188352 lncRNA upstream 361251 11800000 ~ 11800740 (+) True G149674
TU188351 lncRNA upstream 362113 11799561 ~ 11799878 (+) True G149673
TU188350 lncRNA upstream 363984 11797375 ~ 11798007 (+) True G149672
TU188614 lncRNA downstream 664078 12833539 ~ 12841673 (+) True G149869
TU188779 lncRNA downstream 797514 12966975 ~ 12968142 (+) False AMCG00000381
TU188827 lncRNA downstream 1243404 13412865 ~ 13413064 (+) True G150042
TU188855 lncRNA downstream 1479942 13649403 ~ 13650051 (+) True G150066
TU188905 lncRNA downstream 1570315 13739776 ~ 13746116 (+) True G150106
AMCG00000339 mRNA upstream 71098 12076056 ~ 12090893 (+) True AMCG00000339
AMCG00000351 mRNA upstream 120068 12034131 ~ 12041923 (+) True AMCG00000351
AMCG00000352 mRNA upstream 166965 11965555 ~ 11995026 (+) True AMCG00000352
AMCG00000353 mRNA upstream 275094 11866155 ~ 11886897 (+) True AMCG00000353
AMCG00000332 mRNA upstream 322311 11836793 ~ 11839680 (+) True AMCG00000332
AMCG00000346 mRNA downstream 32709 12202170 ~ 12208132 (+) True AMCG00000346
AMCG00000347 mRNA downstream 84967 12254428 ~ 12285830 (+) True AMCG00000347
AMCG00000344 mRNA downstream 175406 12344867 ~ 12345699 (+) True AMCG00000344
AMCG00000345 mRNA downstream 187380 12356841 ~ 12364023 (+) True AMCG00000345
AMCG00000357 mRNA downstream 215947 12385408 ~ 12399523 (+) True AMCG00000357
TU188404 other upstream 176276 11982460 ~ 11985715 (+) False AMCG00000352
TU188165 other upstream 1626854 10534590 ~ 10535137 (+) True G149525
TU188032 other upstream 2191190 9969324 ~ 9970801 (+) True G149424
TU187550 other upstream 3580879 8579717 ~ 8581112 (+) False AMCG00000249
TU187301 other upstream 4799284 7361020 ~ 7362707 (+) True AMCG00000217
TU188603 other downstream 510209 12679670 ~ 12727903 (+) True G149859
TU188861 other downstream 1521378 13690839 ~ 13692589 (+) True G150069
TU189044 other downstream 1963677 14133138 ~ 14153840 (+) True AMCG00000412
TU189714 other downstream 4766532 16935993 ~ 16938282 (+) True G150750
TU189794 other downstream 5375993 17545454 ~ 17548508 (+) True G150811

Expression Profile