RNA id: AMCG00000346


Basic Information

Item Value
RNA id AMCG00000346
length 2192
RNA type mRNA
GC content 0.49
exon number 7
gene id AMCG00000346
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 12202170 ~ 12208132 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCAAGCACTGAGCCCTGCAGTTACGCACAGCCTACACGGCAGCTGGCGAGCAGGACGGACAGCTTGCTCTTCCCTGCCAGCGAGATGCACAGCCTGAGCATCCCGGTCTGCACTGCAGCGCTCTTCACCTTCTTCTTCATTGCATCCAAGTTCGTCCCCCCCCGCCGGCACTTGCAGGTAGAGGACCGAGCTCTGGTCAGTGGACCGCTAGACCCCCTTGCTGCCTCCAAACGAAATGCCTTAAGAAAGGAGATCAAGGAAAGGCGCAGGGAGCTTTTGCCTTCCTACACTGCGAAACTGTCCCACCAAGACCCGAGTGCCTACCTGGAGAATGACGTCAACCTCGCAGCAGCAGGGACAGACCTGGACCTTATGGGCTGCAAGCATCTCCGTCACGTTCAAAACTTACAGTTCCTCGGGTCGGGCTACACCAAGGCGGTTTTGAAGGGAGCTTTGCCCCGAGGATTGCTTATTGCTCTGAAATCGGTGAACCACCAAGGGACTGACATGAGGAGGTGTGTGGAGGACTTTGGAGACGTGGAAGGGTGCAGTGAGCTGGTGTCCTACAAACTGATCAAGGAAATAATGCTGTTACAAAGACTGCAGCACCCCAACATCATTAAGCTCCATGGCCACTGTCAGGGCAATAAGTGGGGCAGCGGCATCACCGCAGCGCTGGAGCTGGGCTCTCCACTCCAGATGATCCAGCTTCTGCAGAGCCCCTGGGAGGAGCGCTTTCGGATGTGCCTGAGCCTGGTGAGGCTTCTCCATTACCTGTCTGTCTCCCCCCTGGGCTCGGTGGCTCTGCTGGATTTCCAGCCGCGGCAGTTCGTCACTGTGGCCGGGGAGCTGAAGCTGACCGACCTGGACGACGCCACGGCGGGGGATCAGGACTGCAGCACAGACACCGACTGCACCCTGACCTTCCCACAGAACAACTTCACGGTCCCCTGCACCAAGGGCGGGACCTGTCAGGGTCTCAACGAGAAGAGGAACCTTTACAATGCATACAgGTATTTTTTCACTTATCTGCTGCCCCATCGAGCTCCGCCCACCCTTCAGCCTCTTGTGGATAAAATCATGAATTCAACAAGAGGGCTGAGCAGTGGGATAAACGAGATTCTGGAAGCATTTGAAGAAATCTTACAGTTATACATGTCTGGACAATACCTGAAGAACCTGTCACCATCTTTACTCAGAGATTATACTGCCGTGAAAGGGATGAGGGTGGCGGGCAGCGTCGACTACCGATGCTGGCCGTCGTACAACCAGCAGGGCTGCGTCCTGTCTGTGCACAGTGCCAGGGAGGCAGCGCACATCTGCAGCTCCCACGCGCAGTGTACCAGCTTCACGATCAGCAGCCAGAGGACCTGGGCAGGGCGGTTCCTAGCatcattcagaagtggttttcgaGATCTGATACCAGATGTTAATTCTGCTCTGTATGTGAAGAGGGGTGGTAGCTCCAGGGCAGCAGCGCAAAGAAAAGAGAGGGGATCAGAGGTGGGGGGAGCTGGGGCTGGAATGTCTGAAGTAAattaatatgatatatttataagATTTTGCACTGCAGTTGTTTGATCTTCCTGCCAATCTCTTTGTTGCCAAGAATCGTTAAGGGATTTCCCTTGAGGTATAATTAACAAAAACCTGCCTactaatttttcattttatttttttattttgttttggttatatttatgataaAGTGTTTGGAACTTCTAGTTGTAGATTTTAAGGATCAAACGGAGAATTGTaggacagtaaaaaaaaaatgaacacaaatacaCTTTGATGTTGGTAAGATCAGACGTTTTGCAGCTCTGTGCtggatttataaaatataaaaggaatCTACTTCAATGactattatttataaagcaaataattacTGGAACCACACCATTTATCTAAGATAAGTTCAAACACTCATATATGAGTTGTGTGGTTAAATTCTCTTGcttaatgtaaaaaacaaatgcaacaaaaccCTAAATGATGTTCTCTTCGAAACTAAGGGCTGCTGATGTAATTACATGCCGAGTTAGGTGTGTTATATTGATCTGATTCTGCATCATTTACATAATCACACCTTGTGGGTGTTAATGAACTTTCTTGTTCATTCTTGTACCTTCTTTCAAGGAAAGAAACTCTATTTATTGAACTGGGACAGTAACCAATTGATGaga

Function

GO: NA

KEGG:

id description
K17548 PKDCC; extracellular tyrosine-protein kinase PKDCC 

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188432 lncRNA upstream 103798 12092387 ~ 12098372 (+) True G149747
TU188424 lncRNA upstream 174727 12027227 ~ 12027443 (+) True G149739
TU188352 lncRNA upstream 401430 11800000 ~ 11800740 (+) True G149674
TU188351 lncRNA upstream 402292 11799561 ~ 11799878 (+) True G149673
TU188350 lncRNA upstream 404163 11797375 ~ 11798007 (+) True G149672
TU188614 lncRNA downstream 625407 12833539 ~ 12841673 (+) True G149869
TU188779 lncRNA downstream 758843 12966975 ~ 12968142 (+) False AMCG00000381
TU188827 lncRNA downstream 1204733 13412865 ~ 13413064 (+) True G150042
TU188855 lncRNA downstream 1441271 13649403 ~ 13650051 (+) True G150066
TU188905 lncRNA downstream 1531644 13739776 ~ 13746116 (+) True G150106
AMCG00000340 mRNA upstream 32709 12161991 ~ 12169461 (+) True AMCG00000340
AMCG00000339 mRNA upstream 111277 12076056 ~ 12090893 (+) True AMCG00000339
AMCG00000351 mRNA upstream 160247 12034131 ~ 12041923 (+) True AMCG00000351
AMCG00000352 mRNA upstream 207144 11965555 ~ 11995026 (+) True AMCG00000352
AMCG00000353 mRNA upstream 315273 11866155 ~ 11886897 (+) True AMCG00000353
AMCG00000347 mRNA downstream 46296 12254428 ~ 12285830 (+) True AMCG00000347
AMCG00000344 mRNA downstream 136735 12344867 ~ 12345699 (+) True AMCG00000344
AMCG00000345 mRNA downstream 148709 12356841 ~ 12364023 (+) True AMCG00000345
AMCG00000357 mRNA downstream 177276 12385408 ~ 12399523 (+) True AMCG00000357
AMCG00000358 mRNA downstream 210647 12418779 ~ 12422714 (+) True AMCG00000358
TU188404 other upstream 216455 11982460 ~ 11985715 (+) False AMCG00000352
TU188165 other upstream 1667033 10534590 ~ 10535137 (+) True G149525
TU188032 other upstream 2231369 9969324 ~ 9970801 (+) True G149424
TU187550 other upstream 3621058 8579717 ~ 8581112 (+) False AMCG00000249
TU187301 other upstream 4839463 7361020 ~ 7362707 (+) True AMCG00000217
TU188603 other downstream 471538 12679670 ~ 12727903 (+) True G149859
TU188861 other downstream 1482707 13690839 ~ 13692589 (+) True G150069
TU189044 other downstream 1925006 14133138 ~ 14153840 (+) True AMCG00000412
TU189714 other downstream 4727861 16935993 ~ 16938282 (+) True G150750
TU189794 other downstream 5337322 17545454 ~ 17548508 (+) True G150811

Expression Profile