RNA id: AMCG00000347


Basic Information

Item Value
RNA id AMCG00000347
length 4611
RNA type mRNA
GC content 0.48
exon number 22
gene id AMCG00000347
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 12254428 ~ 12285830 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTCCCCTTCTGTCTCCATGGTGCTCTGTTTGGAGGACTAACTGGAgtctccctctgtgtctgtgtagatGACAGTGCCTCGGCTGCCAGCAGTATGGAGGTTACTGACCGCATCGCCTCCCTGGAGCAGCGTGTGCAGCTGCAGGAGGATGAGATCCAGCTGCTGAAGTCTGCACTGGCTGATGTCGTCAGGCGGCTCAACATATCCGAGGAGCAGCAGGCCATGATGAACCGAAAGGGACCCACCAAAGACCAGACTGCTGTGAAAAAATCCCCTCCTTCAGAGAGTGATAGATCAGGCAGTGCTGGCAAGCCAGCCAGACCCCTAATGCAGGCCTTGCCCTTGAGGCCAACAGTGAACAATGGCACCGTACTACCAAAGAAAACCAGCACACTGCCGTCCCCCTCGGGCACCAGGAAGGACACCTCATCACCAGCAACCAAGAGTACTGTGAAGAGAACGAGCTCGACGGAGCGTGTGGGAACTCTGAGCCGCAGGGAGAGCACCGGAGAGTCCAAGAACAACCGCACCCGAACAGGCTCCACTGGCAGCAACTCCAGCGGCAAGAAGAACAGCGACAGTAAACTGAAGGATCCCGTATTCAGTGCAGAGGAGGgatatgtgaaaatgtatttgagagGCCGCCCCGTTACCATGTACATGCCTAAAGATCAAGTGGAGACCTACAGTTTGGATGCGAAATCAGATCTGCCAACCAAGAAGCTCAAACTGGACTGGGTATCCAGTTATGGATACAGAGGCCGAGACTGCCGTTCCAACCTGTACCTGCTTCCCACCGGGGAGACGGTTTATTTCATCGCCTCAGTGGTAGTGCTGTACAACGTGGAGGAGCAGCTCCAGAGACACTACACTGGACACACGGATGACGTCAAGTGCCTAGCAGTCCATCCAGACAAAATCACCATAGCAACAGGACAGGTCGCAGGCACATCCACCGATGGCAGACAGCTGCCACCTCACGTGCGGGTCTGGGACTCGGTGAGCCTGAACACACTGCACATCATTGGGACTGGCTTCTTCGACCGTGCGCTGGCCTGCATTGCCTTCTCCAAATCGAACGGAGGCGGTACACTGTGTGTGGTGGATGACTCCAACGATCACGTCCTCTCTGTGTGGGACtggcagagagaggagaggctTGCAGATGTCAAGTGTTCCAATGAAGCCGTATTCACAGCAGATTTCCACCCCACTGACACCAACATCATCGTCACCTGTGGAAAGTCTCACCTTTACTTCTGGACTTTAGAAGGGGGCTCCTTAGTGAAGAAGCAAGGACTGTTTGAGAAACAAGAGAAGCCCAAGTTTGTCTTGTGTGTGACTTTTTCAGAAAATGGTGACACAATAACTGGAGACTCCAGTGGCAATATCCTGGTCTGGGGAAAagGCACTAATCGGATTAGCTATGCCATCCAAGGGGCACATGAAGGAggcatttttgcactttgtatgtTGCGCAACGGCACTTTAGTGTCGGGCGGAGGAAAGGACCGCAAGCTCATCTCCTGGGATGGGAACTACCAGAAGATACAGGCTGTGGAGATTCCCGAGTCATATGGACCTGTGCGCACCGTGGCAGAGAGCAAGGGAGACTGCGTGCTGATTGGCACCACCAGAAACTATGTCCTGCAAGGCACTTTACTCGGGAATTTCATACCAATCACCCAGGGTCACACGGATGAGCTGTGGGGCCTGGCAGTGCACCCTCGGAAACCACACTTCCTGACTTGCGGCCACGACAAGCATATCAGCCTCTGGGACTCCTCCACTCACCAGCCCATCTGGAGCAAGACCATGGAGGACGCAGCCCAGTCGGCTGGTTTCCATCCATCTGGAACTGTTGTCGCTATCGGAACACAGACTGGCAGATGGCTGGTTCTGGACACCGAATCCAAGGACCTGGTCACTGTTCACACGGATGGGAATGAGCAGCTGTCAGTTATGCGCTATTCACCGGATGGCACTCTCTTGGCAATCGGATCACatgacaattacatttacatctaTGGAGTTGTTGACAATGGCAGGAAGTACAGCAGAGTGGGAAAGTGCTCAGGTCACTCAAGCTTCATCACTCATCTGGACTGGTCTGTGGACTCCCAGTACCTAATGTCCAATTCAGGAGACTatgaaatactgtactGGATTCCCTCTGCCTGCAAACAGGTGGTCAGTGTGGAGACAACAAGGGACATCGAGTGGGCCACATGCACCTGCACTCTGGGCTTCCATGTCTTCGGGCTGTGGCCAGAGGGCTCAGACGGAACGGATATCAATGCGGTGTGCAGATCGCATGAAAAGAGGCTCCTCGTCACCGGAGATGATTTTGGAAAAGTCCATCTCTTCTCATATCCCTGCTCACAGTTCAGGGCTCCAAGTCACATCTATGGTGGACACAGCAGTCATGTGACCAATGTGAACTTCCTGTTTGATGACAGTTACCTCATTTCCACCGGGGGGAAGGACATGAGCATCATGCAGTGGCGAGTCGTGTAAACGACGCCGGGGGGACGGAGCTCCCACTCCACAGAGGGGGGGCCGCCCATCCCAGAAGGCTGTGCTGCACATGGAGCTACAGAGGCATACGCAAAGggacaacaacagcaaaaaaaagacAGGCTGGCTGACACGTCGGAAtcggttttcttttcttctttttcttctttttttttcgttCACAGctcaggaaacaaacaaagaaaagattttatttaaaatgtacacggCAGTGCTCCTCTTGTAACAGTATGCTCTAAACCACAGGCATTGAACCATCTCGGAACGACAGACCGGCACGaccttccctttcttttttctgctaGTTCTCAGAGAAGGTCGAGCTCACAGACTTCTACCGCTTAGGTATTTATGTCAGCAGATCTAAAGATCAGAAACTGTCTGGCTTAAGTCCAGCTACTGTGTTTCTCCTGTCACACTAATGCCTTTTAGAGActgtaaatatgtgttttttaacGTCACTGGTTGTGCTGTGTGCAGCTGTGAGGTCAGCGCAGTTCCTTCTTATTGACAAGCTACACCTGCAGCCTTGGTAAAGTGCTGACTAGGCTCCTGCCGCCTGCTAAACTGCACTGCCCCACCTCGACCAAGTCAACTGTGCTCTCTCTGTCACAACTGCCCCACTCAAACCCTAACCCTCACTCACccctgccttttttattttttacttaagtCTTACAACTACAGCACAACAGTTTGCTATTCAACCTTTCactccaaaacagaaaaatatctgGCATCGGTGCATGTGGCTTTCACTGTCTGTAGTAGAACATGTTTAGATTTCATCCGAACAACCAGCGATCATCTCTTCAAAACATCGAGGTCAGACATTCTCACAGTATTTGAACACGGAgggcttttttaaaatatagacctttgaataaaaaatagaaacacacacacacatatactgttACAAATTGCAAGCACAtaagtatacaaatatatattacagtaaacCAAACAGAGTAGTTATACTGTACATAACTCATCCCATCCCATTATGAATTGTTTCTGAagataaaaaatgcatttagactCACgcttattaataaaattgaCAATTTATCCTTAAAAAAACGAAGCTGTTTATTTAAACCAGGGTTAAACGTTATTTATTGGATGCTCTCTTCAGCCCGTGGTTCCTCTTGATCCAAAGGTTTCTGGGCTCCTGTGAGGTAAGCCTGGAGGTTCACATCCCTGCAAACTGTGGATTGTGGACATAGGGCATTGTCAAGTGTCCCAGGACTACCAAGGCGTGGCTGATGAACTTCGGTACAGTCTGGAATGTATTGGCAAAGAAGAGCCGCTCCGAAACAGCCCTTGTGTGACATTCATAAACACTATTCTTCATGAGCGAGCAGATTCAAGCATATTTTCGGCAGGAACATACTAACGACATAGGGTCCATGTTCGACCACGACCAAACACCGTTGTCACTTTACGGTTTGGGTTTTCTCTGACTCATCATTAGCGAGTGTCACCATCAATAATCAACTATCATGAACAGGGATTTAATCAACAACCATGGAACCATATTCAGAGCTACATAAAGGCAGCAGGGGATCTCTTTGAATAAAACCAGATCTGTGGACACGACCAGAAACCATTTACTTTTGGAAAACATTCAAAGAAAACGTCAGCTGCATTGTTGGTCGTTTTACATAAAAGAACATCATTGTTGCACTATTCACCCACAGAGGTACAACGATTTAACCATGACGGCACCACTTAgaaatgtgcacattttgtGGAGTGGTATGGCATAGAAAATAAACgacaaaaggaaaactaaaCTGTTGATTGTTGAGGATAAACTAAAGATTACGATGTATTGTTTACAATGGGGAATGTATGTAGAAATATGGTAAACATGGTAGCTTCCATTATAACACTAATCTAACTTTCATTTGTGATTGACAGTAAATATCTATTAAATTCATTCAATCATGTATGGCTGTCGTGCTCATGGTGTGAAACCCAATATGTGAACACccttctgtctctgtctcgCCAACTCACATGTCAAGGGATTGCCGCAGGTCTGAGCCAAATTCCACATCGAAA

Function

GO: NA

KEGG:

id description
K18595 EML1_2; echinoderm microtubule-associated protein-like 1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188432 lncRNA upstream 156056 12092387 ~ 12098372 (+) True G149747
TU188424 lncRNA upstream 226985 12027227 ~ 12027443 (+) True G149739
TU188352 lncRNA upstream 453688 11800000 ~ 11800740 (+) True G149674
TU188351 lncRNA upstream 454550 11799561 ~ 11799878 (+) True G149673
TU188350 lncRNA upstream 456421 11797375 ~ 11798007 (+) True G149672
TU188614 lncRNA downstream 547709 12833539 ~ 12841673 (+) True G149869
TU188779 lncRNA downstream 681145 12966975 ~ 12968142 (+) False AMCG00000381
TU188827 lncRNA downstream 1127035 13412865 ~ 13413064 (+) True G150042
TU188855 lncRNA downstream 1363573 13649403 ~ 13650051 (+) True G150066
TU188905 lncRNA downstream 1453946 13739776 ~ 13746116 (+) True G150106
AMCG00000346 mRNA upstream 46296 12202170 ~ 12208132 (+) True AMCG00000346
AMCG00000340 mRNA upstream 84967 12161991 ~ 12169461 (+) True AMCG00000340
AMCG00000339 mRNA upstream 163535 12076056 ~ 12090893 (+) True AMCG00000339
AMCG00000351 mRNA upstream 212505 12034131 ~ 12041923 (+) True AMCG00000351
AMCG00000352 mRNA upstream 259402 11965555 ~ 11995026 (+) True AMCG00000352
AMCG00000344 mRNA downstream 59037 12344867 ~ 12345699 (+) True AMCG00000344
AMCG00000345 mRNA downstream 71011 12356841 ~ 12364023 (+) True AMCG00000345
AMCG00000357 mRNA downstream 99578 12385408 ~ 12399523 (+) True AMCG00000357
AMCG00000358 mRNA downstream 132949 12418779 ~ 12422714 (+) True AMCG00000358
AMCG00000359 mRNA downstream 144228 12430058 ~ 12459938 (+) True AMCG00000359
TU188404 other upstream 268713 11982460 ~ 11985715 (+) False AMCG00000352
TU188165 other upstream 1719291 10534590 ~ 10535137 (+) True G149525
TU188032 other upstream 2283627 9969324 ~ 9970801 (+) True G149424
TU187550 other upstream 3673316 8579717 ~ 8581112 (+) False AMCG00000249
TU187301 other upstream 4891721 7361020 ~ 7362707 (+) True AMCG00000217
TU188603 other downstream 393840 12679670 ~ 12727903 (+) True G149859
TU188861 other downstream 1405009 13690839 ~ 13692589 (+) True G150069
TU189044 other downstream 1847308 14133138 ~ 14153840 (+) True AMCG00000412
TU189714 other downstream 4650163 16935993 ~ 16938282 (+) True G150750
TU189794 other downstream 5259624 17545454 ~ 17548508 (+) True G150811

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00024030 False 6463 mRNA 0.43 24 NC_007128.7 30976484 ~ 31059021 (-)
grasscarp (Ctenopharyngodon idella) CI01000189_03165381_03189571.mRNA True 3353 mRNA 0.45 22 CI01000189 3164466 ~ 3189571 (-)