RNA id: AMCG00000351


Basic Information

Item Value
RNA id AMCG00000351
length 2738
RNA type mRNA
GC content 0.45
exon number 11
gene id AMCG00000351
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 12034131 ~ 12041923 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttaatttccCTTCCCAACATGGCGTCTCTGCTGTTCCACGCACATTACTGCGCAGCTGCAAACACCACTTCAGTTCCGACCTGGTTCAAGCCTGCTACTGAAGTCAAGCTGGTGCTGctattttgctttttctttctgacTTCAGGACATAATACCACCGACAATGTTGGCGGCACGGAGAGCACTGTTGACCGGCTTGAGATATGCCGCTGTCCCCAGACGTGCCTGCGCCGGCTCTGCAGTGCCGATAGACGATATTGTTAACGGACTGACAGACGAGCAGATTCAACTCAGACAGAGCGTACAGAGGTTCTGTCAGGACCAGCTGGCTCCCAAAGCTCAAGAGATCGACCAGAACAACgattttaaagaaatgaagGAATTTTGGAAACATCTTGGTGATCTTGGAGTGCTGGGGATAACGGCTCCTGTGGAGTTTGGTGGCTCAGGATTGGGTTTCCTGGATCATGTAATAGTGATGGAGGAAATTTCACGTGTGTCTGCCGCAGTGGGGCTGAGCTATGGCGCGCACTCCAATCTCTGTGTCAACCAGCTCGTCCGCCATGGTAATCAGGCCCAGAAAGAGAAGTACCTGCCAAAGCTCCTAAACGGTGAGCATGTGGGTGCCTTGGCCATGAGTGAGCCTGGCGCTGGCTCTGACGTCGTGTCCATGAAACTCAAGGGAGAGAAGAAAGGAGATCACTACGTGCTGAATGGCAATAAATTCTGGATAACAAATGGGCCAGAGGCAGATGTGCTCATAGTGTACGCCAAGACGGATCCCAAGTCTAACCCCACCTCTCGTGGGATTACAGCCTTCATCGTGGAGAAGGGAATGCCAGGGTTCAGCACGGCACAGAAACTGGACAAGCTGGGCATGAGGGGCTCCAGCACCTGTGAGCTAATCTTTGAAGACTGCAAAGTGCCTGAACAAAATCTGCTGGGGCACCTGAACAAAGGTGTGTATGTGTTGATGAGTGGACTGGACCTGGAGAGACTAGTGCTGTCTGCCGGACCTATAGGGATCATGCAAGCAGTGATGGATCACTCCGTCCCCTACATGCACATCAGAGAGGCTTTTGGACAGAAGATCGGGCACTTCCAGCTCCTGCAGGGGAAGATGGCTGACATGTACACCCGGCTGAGCTCCTGCCGTCAGTACGTGTACAATGTGGCGCGGGCCTGTGACAGGGGCCACTTCAACTCCAAGGACTGCGCGGGAGTCATTCTTTACGCAGCAGAAATGGCTACTCAAGTGGCGTTGGATGGCATTCAGTGTCTGGGAGGAAATGGTTACATCAACGACTATCCAATGGGACGCTTCCTGCGAGACGCCAAGCTGTACGAGATCGGTGCCGGCACCAGCGAGGTCCGGAGACTCGTCATTGGCAGGGCTTTCAATGCCATGTATAAGTAACCTGGAAACTCTAACATCCTTAACATGGACTGAGCAGGTATACTGCCCAGCCGCATCAAGAGGCCTTAGAGATGAACTGAAAACAGGACGGTTCCTAGATCATACCTCGGACAAACGTCTTGACCATGTCCTTACAAACAACCACTGCACTACAGGCACTGTGGTGCTGCTCAAACTCATCAGCCTGGCTTCCGCTGCAGTTTATGCCAGTCTTTTAGATTACAGTTGTGTAGCTGATGAAATAAGACCTCTTCAGACTTTCGAGATTCCGTCTCCCCCGGATGTAATCAAGTTAGCATCTGGGACCAGTCCAGCCCGTGTGAAGTGGATATGAAGAGCGGAGGGATGCATGAAGAGATTTGTATCACTGTGAAACCGGAAGGGGCTACTTGTATATAAGGATGCTGTACTAGACCAATCCTTATTCAGTACAAAACATTAGGCTATATATGGCTTATGGACAGTGGAACGATCTGgaattttattgcttttattgcttttctatTCTCTTCCAACAATGTTGTCCAACCCTATAAACCATACACTGGTGCTTTGTCTGTTGAGAACTGCAAATTCCAGAGTATGTTGTTCAGTTTaacaattgtttaaataatttaaaaaaaaaaaattgaatacattttgttaaacactgcatttaagttttaaaatattttattgccaTCAATGCAGATTATCAAAGATCAGTAGATCTTTTCAGTAGAAAGTTTAGAAATGATCActcaatataatgttttattattggaTAGCTTGGGGATTCCATAAATCTGTTGAGAAAAAGGCTGCTAGTCTTTCTTTCTGATTTCATAGCTGGTGTGTAAAATACTGATTAGCAGATTTTGATTCTTTGACTAAATTTGAAAGATTTAAgtaaatttgtttttctgtagacCATCACTTAcaatatcttattttttaatattatgaaaATGACTTGTATGTTTGCGGTTTGTGgaaaaattagattaaaaaaaactgacaacTGTTCCTTGTCGGTTCTGATTACTCCGTTGCTAGTAAAGTATGTGGAATCCGTTCAGCTTGGATGAAGTTAGGAATTGCATGATTCCACATGGTTTTTGTGTTCTTCAAAATCTAGAAATGTTTAGAGGCAACACTACAGCTGTTAAACATGGAAATTCAGAACAAGATCTTTACAAATGGTTTAGGTGCAGAGACTCAAACTAAAGCATTGTGATTGAAGCTGCTTTACTGGTGCCCTCAATAATGAAGACTGCTTGCTCTTGTATGCAATTCTTAAATTTATGGATTCCAgtgctataaaaaataaaatacggaccag

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0050660 flavin adenine dinucleotide binding molecular_function
GO:0003995 acyl-CoA dehydrogenase activity molecular_function

KEGG:

id description
K00253 IVD, ivd; isovaleryl-CoA dehydrogenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188424 lncRNA upstream 6688 12027227 ~ 12027443 (+) True G149739
TU188352 lncRNA upstream 233391 11800000 ~ 11800740 (+) True G149674
TU188351 lncRNA upstream 234253 11799561 ~ 11799878 (+) True G149673
TU188350 lncRNA upstream 236124 11797375 ~ 11798007 (+) True G149672
TU188346 lncRNA upstream 239275 11793367 ~ 11794856 (+) True G149668
TU188432 lncRNA downstream 50464 12092387 ~ 12098372 (+) True G149747
TU188614 lncRNA downstream 791616 12833539 ~ 12841673 (+) True G149869
TU188779 lncRNA downstream 925052 12966975 ~ 12968142 (+) False AMCG00000381
TU188827 lncRNA downstream 1370942 13412865 ~ 13413064 (+) True G150042
TU188855 lncRNA downstream 1607480 13649403 ~ 13650051 (+) True G150066
AMCG00000352 mRNA upstream 39105 11965555 ~ 11995026 (+) True AMCG00000352
AMCG00000353 mRNA upstream 147234 11866155 ~ 11886897 (+) True AMCG00000353
AMCG00000332 mRNA upstream 194451 11836793 ~ 11839680 (+) True AMCG00000332
AMCG00000324 mRNA upstream 299632 11732396 ~ 11734499 (+) True AMCG00000324
AMCG00000323 mRNA upstream 319513 11704595 ~ 11714618 (+) True AMCG00000323
AMCG00000339 mRNA downstream 34133 12076056 ~ 12090893 (+) True AMCG00000339
AMCG00000340 mRNA downstream 120068 12161991 ~ 12169461 (+) True AMCG00000340
AMCG00000346 mRNA downstream 160247 12202170 ~ 12208132 (+) True AMCG00000346
AMCG00000347 mRNA downstream 212505 12254428 ~ 12285830 (+) True AMCG00000347
AMCG00000344 mRNA downstream 302944 12344867 ~ 12345699 (+) True AMCG00000344
TU188404 other upstream 48416 11982460 ~ 11985715 (+) False AMCG00000352
TU188165 other upstream 1498994 10534590 ~ 10535137 (+) True G149525
TU188032 other upstream 2063330 9969324 ~ 9970801 (+) True G149424
TU187550 other upstream 3453019 8579717 ~ 8581112 (+) False AMCG00000249
TU187300 other upstream 4671424 7359278 ~ 7362707 (+) False AMCG00000217
TU188603 other downstream 637747 12679670 ~ 12727903 (+) True G149859
TU188861 other downstream 1648916 13690839 ~ 13692589 (+) True G150069
TU189044 other downstream 2091215 14133138 ~ 14153840 (+) True AMCG00000412
TU189714 other downstream 4894070 16935993 ~ 16938282 (+) True G150750
TU189794 other downstream 5503531 17545454 ~ 17548508 (+) True G150811

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000189_03335757_03343285.mRNA True 1698 mRNA 0.45 12 CI01000189 3335373 ~ 3343285 (-)