RNA id: TU188404


Basic Information

Item Value
RNA id TU188404
length 2055
RNA type TUCP
GC content 0.41
exon number 4
gene id AMCG00000352
representative False

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 11965555 ~ 11995026 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGTGGATATAGAGGTGGTAATGCGGCGCCTCATGATGACCTCACATCAGATGGCCTGGAAgggatttcatttgtgaatccGATTGGAGAGATTTATCTTCATCCACTAGCAGCGATGGAGGGTCATGGCGAGGTGGACATCAAGGTTCAGCTGAACTGCAGCCACTGCCACTCAGAGAGCTGCAAGCGTGACGAGAACACCAAGCTCatcctgtgtctgtgtcacaACGGGGAGGTGCTGGCCAGCGACAACGTCACCTGCACAGCCCCGCGAGGCCCGACCCCAGAAGGGCACCTCTCCCTGCCGCTCATCTTGGCTGTGGTGGCCTCCACTGTGGTGACTGGCATCGTCCTGGCCTGTGCCAGCCTCATGCTCAGTAAGAGACTTTACCAGCTATGTATGCACCCCATCCCGTCTGTGCTCACCTTCCATCGCCTCTGAGGGCCCGGCTCTCTCTGGCACACATTCCCAGTCCAGTCCACACACAAACCCCACCAGCCCCCCAGGAACAGCACTGACTGACCATCCTCACtcccttgtgtttgtgtgtttgtgggtttttattatattgttttattttatttttccttaccATATTTCTGTGGCTTTCAGACTCAAGCGATAAGGGTCACTGTGTGGTTTTTGGGTGGAAtctaaaacacactgaaaattCACTCGCCATCCCATGTAAAACAGAACTGAATCAACAGAATGGATAAAGACGATGCCGGTATTtaattcagtcagtcagtcggttACAGTCTATCTGAATTAAAAAGGGAAGTACAGGCAGAGATTAATACATAATTGTTATAcaatcacattttgttgcttttttgccCATGTTCATGGCTGTACTAATGTAAGAGCCAGGGGATAGAAGAAAATTGACTGTTTCATTGATTGCTTTCATGTTGTCAGGAGTGCATCAGCCAAGCTTTCTGTTAAATAGCTATTTGTGTTAGTCATATAGGAAGGTGTGGAGGGTAGCGGAAATTCAAAGTGGACATCTTCAAAAAACCAGCCTCACAACAAAGGTTGAACTTTCTGACCCATACATCTAGCTATTCGTTGTTGTCTGAAACAAGGGATAGCTGGAATTTCAGTTCTTAATTTTGCTGGGCCCCCACTCATTGTTCTTTTAAGTCAAATTGACTTTCGACTAATGGATAACTCTTTTTATCCAAGTCCCAGCTATAATAAACTATGACAGTATAATTGAAATATATCAAGCTTATGTCTATAGGTACAAGGTCCTTGCCTCTTTCTTATTCtgtctttttccctttttgtgaaaaaatgttttttacaaaGTTCTACCCTGCTGGAATGAGGTTTGGAGTGATAACAGGTCTTACTTCTGTTACCGTCCTAATAGAAAAAAGGGTCACTGTATCTCTATGATATGACCTCCACAACAGAGCGCTGTCGCAggtctctgtgtttttgtttagtctGAGTAAGATGCAGCCACTGGCAGATTTGAATGaggaatgtgtttatttacaggaACAGGAACCAGAATCCCATTCCAGCATTGTGTGACTTTTCAAATCATGTATTtccaaaaactaaacaaataagcTCCTAAGAATTATATAGTGCATTTTACCAACCCTCTGTTTTCTTGGGAATACATTGTTCATAGTTTGTCTACCTTTGTTACCTATAGACTGGAatcttattaatttataatgataaagtacttattataaagtgtattCAAAATAAGGGAATGCCAATAACTCTGTGAAGCTTGCATTGTATTATTCTGAAAGAAAATACTGTGTTAAATTGTATGACAAATAAACCACTTAAACATTACCACATAGCCCAGTAATGGTTGCTGTTAAATAATTAGTAAAGTGCAATTACAACAGCTGGACCACACATAAGGTATTGCATAAGACCAAAAGAGCAGTGATGGAATGTGGCCgaaagaaacattaaattataacaAAGTGTTTGCTTTCTATGCCgttgtcaaaatgttttaaaatattacagctgataaagaaagagaaaaaaagaaacagagctAAAGTAATATAgctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188352 lncRNA upstream 181720 11800000 ~ 11800740 (+) True G149674
TU188351 lncRNA upstream 182582 11799561 ~ 11799878 (+) True G149673
TU188350 lncRNA upstream 184453 11797375 ~ 11798007 (+) True G149672
TU188346 lncRNA upstream 187604 11793367 ~ 11794856 (+) True G149668
TU188345 lncRNA upstream 190364 11791871 ~ 11792096 (+) True G149667
TU188424 lncRNA downstream 41512 12027227 ~ 12027443 (+) True G149739
TU188432 lncRNA downstream 106672 12092387 ~ 12098372 (+) True G149747
TU188614 lncRNA downstream 847824 12833539 ~ 12841673 (+) True G149869
TU188779 lncRNA downstream 981260 12966975 ~ 12968142 (+) False AMCG00000381
TU188827 lncRNA downstream 1427150 13412865 ~ 13413064 (+) True G150042
AMCG00000353 mRNA upstream 95563 11866155 ~ 11886897 (+) True AMCG00000353
AMCG00000332 mRNA upstream 142780 11836793 ~ 11839680 (+) True AMCG00000332
AMCG00000324 mRNA upstream 247961 11732396 ~ 11734499 (+) True AMCG00000324
AMCG00000323 mRNA upstream 267842 11704595 ~ 11714618 (+) True AMCG00000323
AMCG00000326 mRNA upstream 293981 11685554 ~ 11688479 (+) True AMCG00000326
AMCG00000351 mRNA downstream 48416 12034131 ~ 12041923 (+) True AMCG00000351
AMCG00000339 mRNA downstream 90341 12076056 ~ 12090893 (+) True AMCG00000339
AMCG00000340 mRNA downstream 176276 12161991 ~ 12169461 (+) True AMCG00000340
AMCG00000346 mRNA downstream 216455 12202170 ~ 12208132 (+) True AMCG00000346
AMCG00000347 mRNA downstream 268713 12254428 ~ 12285830 (+) True AMCG00000347
TU188165 other upstream 1447323 10534590 ~ 10535137 (+) True G149525
TU188032 other upstream 2011659 9969324 ~ 9970801 (+) True G149424
TU187550 other upstream 3401348 8579717 ~ 8581112 (+) False AMCG00000249
TU187300 other upstream 4619753 7359278 ~ 7362707 (+) False AMCG00000217
TU187301 other upstream 4619753 7361020 ~ 7362707 (+) True AMCG00000217
TU188603 other downstream 693955 12679670 ~ 12727903 (+) True G149859
TU188861 other downstream 1705124 13690839 ~ 13692589 (+) True G150069
TU189044 other downstream 2147423 14133138 ~ 14153840 (+) True AMCG00000412
TU189714 other downstream 4950278 16935993 ~ 16938282 (+) True G150750
TU189794 other downstream 5559739 17545454 ~ 17548508 (+) True G150811

Expression Profile