RNA id: AMCG00000353


Basic Information

Item Value
RNA id AMCG00000353
length 4403
RNA type mRNA
GC content 0.61
exon number 24
gene id AMCG00000353
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 11866155 ~ 11886897 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCAAGTGCGGGGCGGAAGTTACGTCTTGTTGGTTGCGGAAGAACTTCAGAGCGGGGCGGAAGTGGCGGCAGCGCACGTTGGAAGTGTAGCTGGAAGTGAAGGCTGATTGTGGGACAAGTCTTGGCGAATTAGAAGTGTGTGAGATCCTGGAATAGAAATCTGCATCTAAAACTGTGCGACGGGAGTGATGTTGGGGCGACCCCAGCCCGGTGACTCGGAGGCAGACCTCCTGCGCTTTCAGCAGCAGTTCCTGGCGGCGGGGGCAGAGCCAGCAGTGCATGTGGTGCGCCGTCCCGACAAGCGCAGGGGAGAGACGGGGACCGAGGACGGCTTGCCAGAGATGGAGCCAAGCCACAGAGACGTTGTGGACATCCCTGAGCTCCCAGATCAGGTGCCCTCTCTGACCCCGGCACCTCCCAAAAAGTCCCGCTTCAAATCTGAGCATGTGCACTTTGAGGACGAGGACCCTGAGGCCAAGCTGGACAGACACGATACTCATGTCACTGCGGTCTTGACTAAGATCATTGAGAGAGACACCAGCATGGTCCCTGTGTCCCTCCCAGAATTCACTGGGTCTGCTTTCCCCAAGGTGTTCCACAGGTCAGAGGTGAAAGAGCAGGCACCTGCGACCACTGGTAGAAAGAGCATTTTTGCCCAGAAAATTGCTGCTCGGAGAGCGATGGAGGACAGGGCTGGTTCGCACACTGACGCAGGGTGTGGGGGAACAAACTCGCGGGCTGGAACTGAGAGGTCAAACTCACTGCCAGCAGTAAGCATGGAGACTGAGCAGCCCGCTGCTCCGTGTGAAGATCCCAGGCTGGTGAGCTTTGTGAGAAGTAGAGATGGGTCAGTTCCTGTTGTGCGTCCTTCACACACACCGGCAGAGGGACTGGAGGACCAGGGTGCACAGgggagcacagacacacagacggacatCCAGGACTCACACTCAGAGGATGAACAAGTCGAGATGGAGAATGAGGAAGAGCAGCTGGACCCTGAACCCGAAGCTCCGATCACAGagGAGGAGCTGCCGGCCATGCAGGCTCGTTTTGATTTCTCCGGCGCTCTGATTCCCCCTACGGCCGACCTGCCCACGCACCTGGGACTGCACCACCATGGAGAGGAGCCTGAGCTTGCTGGCTACTCTCTCCAGGagctcttcctcctctcccggAGTCAGGTGACCCAGCAGCGCTCTCTGGCCCTCACCACCCTTGCACGGGTCCTGCGCAAGGCTCACTTGGGGGACTTTGCCAGCTGTTTGAAGGGCAGTGTTGTGTGCACTCTCCTGGATGCAGGCCTCCTGTTCCTGCTGAGATTCTCATTGGACGACAGTATTGAGGGTGTCATGGCCGCTGCGGAGTGTCTGGACCAGACTTTCTCCTGGCTCCAAGGTACCTCTACCTTCCCCTTGCTGCCCTCCActctggagcaggaggaggaggatgacgaAGAGGCTGAAGAAGGGGGCCAGGGATGGAGGAAGGAGACGGCTGAGGAAAAGGAGGAGAGGAAACCTGACTATGATGTGGCTCAAGCGGACGTTGTCAAGggCCTGTTGAGGATGAAGCTCTTGGCCCGGCTGCGCTACATCCTGGAAGTGGTGCGGCCAGCGCCCCGCGTGGTGCAGGAAGTGCTGGAGATCCTCACCAGAATCGCCCGCCACTCGGCCTCTGCTGCCAGCCAGGTGCTGGACTGCCCTCGGCTGCTGGAGACAGTGATGTCAGAGTTCCTGCCCTGCTCCTGGGCTCCTCCCCCGCCCACCCTGGAGAGGCCGCATGGGCTGCCTGTCGCGGCGGCGATGAAGCTGCTGAACAGATTGGCCGCCCGCGACCGTCTGTCCCGCTTCCTGGCCGTGGAGCCCGAGGAGCTCCTGCTGGAGCCGGGAGAGGCCCTGCGACTGTGCACTGAGGCTCTGAGGCTGTGGGGCGTGGCGGCTGGCTACGGACAGGCCTGTGACTTGTACAAAGACCTCTATCCCATCCTTGTGAAGGCCCTTCAGGCTGTGCCCAGAGCTGTGTCACAGACAGACCCACGGGATCCCCTCCGGCCCCTGGCCCTGCAGAGAGCACAGGCCCTGCTCACCTTGCTGAACAAAGTCACCCACACGGCCGGCTGCCACCAGGAGCTCCAGGCAGATCTGACTGGTTCTCTTGAAGGAGAGAGTCCGCCCCCTCCCCCGGTGCAGTGGGGTCACGTAACGGGGCTCCGGCCCTTTGTGGAGGGCTGGATGAAGGTGTGTGTGAGAGGCCTGGCCGACCCTGCGCAGCACGAGAGCTCGCTGAGCCTGGCCCCTGCCAACCTGCTTTACCTGGGGGCTTTCTACACACAGCTCAAAGCACAGAGCTCTTTCCGCCCGGTGGAGTGTCTTCAGGAGATGGAGAGCCTCACGGCAGAGGTCCTCCTGCCCCTGCTGTCCCATCAGGATGTGCGCAGCATGATCGACGCCTTGAAgtCCTGCTCTGCTGTCTGCAACTCCACGTCTTGCAGCCCAGGCCCTGAGGCAGTGCCTAGCCTGCCTGGCCTCGCCTGCAGCAGGGGCAGTCCCGCTCTGCGCCTGGCTGGCTCCGGGTCACCCTTCCCCTTGCTCACTGGGCTCTGCAGCCTGATCGATGCCATCACCAGCACTCACCGGGGGCTCACTGACAAGtttTCTGGCTTGCTCCTCTCAGACTCTCTGATTGGCTACCTGCGTGCCTGTTGCCATGCAATGCCAGCCCTGTCTCATTCCAGTGCCTGGCACCTGCGACATGAGTACCACCTGCTCCACCTGCTGCTGAAGATTGCCTCCAAACTGGTCCCAGTAAACCCAGAGGTTGCCAAGCAGGCATCGCTGTTCCACCAGGTTGCCATCGAGATGATACCATGGCTGTTGCCAGGCAGTGAGCACCTGGCCCATGACCTCCTGTCCACTGTGATCTTTAACCAGGACTTCCTCTCAGAGGGACGTTGTGGAGGTCCTGAAGCAGCCGATCTCTCTCAGCGCCTGCAGCTGCAGGACAAGGTCCCCTCCTCTCACCCCTCCCTGGGGTCCCTGCTGCAGGAGGCCTGTGCTCAGCTCCCTTCTGTGCGTGGCTGTTACCTCACTCACCTGGCTCATCTGGAGCCCAGTGTCCTGAAGTCCAGGGACTCTTACCTGGGCCGCACCCCCTGGGTGAAATCTCAGCTGCTCCCTGAGCTCACTGGGCCTGTGCTGCCCTCTGACTGGGCCTTTTTGCCGCTCGTCAGCCTGTACGAGCAGAGTGGGAAGGAAGAGTCTCGGGGGCGTCCTGTGGAGACCCTGCCCCCTGTCTCTGTGGAATCGGCTACACACTGTCTGCAGTGGCTGCTGGTCCTGGAGACCTGGCGCGAGGGCACACTGAGGGCTGTCCCACCTGCTGCCAAGCTGTGCCGCCTAGCCTGCCTTTTCCTGTCCAGCAGTGACCTGTTCCTGGAGCGCCCCGTGCAGCAGTACACCTGGGCTTTACTGTGGGCTCTGTGCCGCCCCTCCCAGCAGGATGCCCTGGACCTCAGTGTTCCGCCCCCCGGCGTGGCCTCCTTCCACGATTTCTACTCGGCTCTGCTTGCTCAGTTTGAAGCGGTGTCTTTTGGGGACCCGCTCTTTGGCTGCTTCCTGCTCCTGCCCCTCCAGCGGCGCTTCAGCGCGGCCCTGCGCCTGGCGGTGTTCGGGGAGCACGTGGGCCTGCTGCGCTCCCTAGGGGTCTCGCTGCAGCAGCTGCCCCTCCCTGtggagcagttcacctcccccCCAGAGGACTCGCTGGCCCTCCTGCATTTGTACTTCCGGGCCCTGGTGACGGGAGCGCTGCGCAGGACCTGGTGCCCTGTCCTCTACATGGTGGCCCTCGCTCACCTCAACACCTTCTTCTTCTCCCAGGATCCAGCCACACAAGACGTGGATGCTGCCCGAAGAAGCCTCCTGAGGAAGACCTACTGCCTGACTGATGAGATGCTGAAGGATCACCTGCTTCTGTTCAAGCAGCCGAGTGCAGAGAGGGATCTGGGCTTCGAGCTCTACGAGCAGCTGCCCGCCATCAGGGCCAGGCGGCTGGACAGCGTGCTGAAGAGAGAGGAGGGCAGGCCGGCCGAGCGGGACTGAGCTGGGCTGCttcacacagcacagactgaGGGAGTGTGTCTAGAGAAATGGACGGGCACGGAGGCCTTTCCTCCATGCCCACCTGACCCTAGTTGTCTTTTCTTGGACAGCTAGAGGCTGAGACCTCCCCTGGGTAATCCAGGAGGCCTGAAAGTGCTCATACTCCAGCATTGGGTTGGTCTGTGTAAGGGAGATCTGCAGAGTGAGGTAAGGCAGGAGAGAGTCTTAGAGATGTGGAAGATGAAGTGCTTACTGTTGTCTCCTGTACCAAGTACTGTGTGCTGATTAGAATAAAAGGCA

Function

GO: NA

KEGG:

id description
K20826 RPAP1; RNA polymerase II-associated protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188352 lncRNA upstream 65415 11800000 ~ 11800740 (+) True G149674
TU188351 lncRNA upstream 66277 11799561 ~ 11799878 (+) True G149673
TU188350 lncRNA upstream 68148 11797375 ~ 11798007 (+) True G149672
TU188346 lncRNA upstream 71299 11793367 ~ 11794856 (+) True G149668
TU188345 lncRNA upstream 74059 11791871 ~ 11792096 (+) True G149667
TU188424 lncRNA downstream 140330 12027227 ~ 12027443 (+) True G149739
TU188432 lncRNA downstream 205490 12092387 ~ 12098372 (+) True G149747
TU188614 lncRNA downstream 946642 12833539 ~ 12841673 (+) True G149869
TU188779 lncRNA downstream 1080078 12966975 ~ 12968142 (+) False AMCG00000381
TU188827 lncRNA downstream 1525968 13412865 ~ 13413064 (+) True G150042
AMCG00000332 mRNA upstream 26475 11836793 ~ 11839680 (+) True AMCG00000332
AMCG00000324 mRNA upstream 131656 11732396 ~ 11734499 (+) True AMCG00000324
AMCG00000323 mRNA upstream 151537 11704595 ~ 11714618 (+) True AMCG00000323
AMCG00000326 mRNA upstream 177676 11685554 ~ 11688479 (+) True AMCG00000326
AMCG00000325 mRNA upstream 186457 11677153 ~ 11679698 (+) True AMCG00000325
AMCG00000352 mRNA downstream 78658 11965555 ~ 11995026 (+) True AMCG00000352
AMCG00000351 mRNA downstream 147234 12034131 ~ 12041923 (+) True AMCG00000351
AMCG00000339 mRNA downstream 189159 12076056 ~ 12090893 (+) True AMCG00000339
AMCG00000340 mRNA downstream 275094 12161991 ~ 12169461 (+) True AMCG00000340
AMCG00000346 mRNA downstream 315273 12202170 ~ 12208132 (+) True AMCG00000346
TU188165 other upstream 1331018 10534590 ~ 10535137 (+) True G149525
TU188032 other upstream 1895354 9969324 ~ 9970801 (+) True G149424
TU187550 other upstream 3285043 8579717 ~ 8581112 (+) False AMCG00000249
TU187300 other upstream 4503448 7359278 ~ 7362707 (+) False AMCG00000217
TU188404 other downstream 95563 11982460 ~ 11985715 (+) False AMCG00000352
TU188603 other downstream 792773 12679670 ~ 12727903 (+) True G149859
TU188861 other downstream 1803942 13690839 ~ 13692589 (+) True G150069
TU189044 other downstream 2246241 14133138 ~ 14153840 (+) True AMCG00000412
TU189714 other downstream 5049096 16935993 ~ 16938282 (+) True G150750

Expression Profile