RNA id: AMCG00000365


Basic Information

Item Value
RNA id AMCG00000365
length 4042
RNA type mRNA
GC content 0.39
exon number 6
gene id AMCG00000365
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 12572971 ~ 12579239 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGAAACAGCCCGTCTGCAGAGCCGGAGTGCAGATGtattcagaaaaatacaaacttaaaGGAACTAATGCGTGCACTAGGCGGTCTGTGTTTACCTGAAAAATGACCAAACATGACTTCATGACCATGGCATGACACTGATATTGATTCcgagagaaaatacaaattccaCACCGAAAGAAGAGGGAAGCAAGGGGTCGGACAGGATAATGCGCATCTGAGTCGAGAGCAGAGGCTCGGGATGGATGGTTGTGGTCTCCACTCGCTGACTGCAGCCTGCGTTTTGTTCTTTCTCATTATCGGGACTAGCGATGGTACCGAATGCAGTGCTGGATGCAACGCAGAAAACGGATTTTGTGAGAAACCTGGGGAGTGCAGATGCAAACCTGGTTGGCAGGGTCTGACCTGTAGCGAGTGTGTTTCCTATCCCGGCTGTTTACACGGGACGTGCCAGACAGCTTGGCAGTGCATCTGCGACGAAGGATGGGTGGGGAGCCATTGTGACATAGATATCATTACTCTAAGTAACAAGAAGAGTAATTCACTTTTCCTCCCCATGTTTGAGGAAGATATCCACGCGTGTACTGCACAGCCCTGCTCCAATAACTCCACCTGTATCGAAACCGGCGACGGAGGATACATCTGCGTGTGTGCGCAGGGCTACACGGGGGAAAACTGTCACCTCAAAACGGGACCCTGCTTCACCAATGGGTCTCCGTGCCAAAATGGCGGAACGTGCGAGGATGACAATGGGGCTGCAACCCACTCTTCCTGTGTGTGCCCCCCTGGTTTCAATGGCGATTTCTGTGAAATTGATTTAGATGACTGTGAACCTAACCCATGTGTGAATGGGGGGACCTGTGTGGATCATGGACCCAACTACAGTTGTCTTTGTCCCGGGAGGTTCTCTGGCAAAAACTGCAACGACACTCTGGTGCCTTGTGTCAGTAATCCTTGTGAAAACGGAGGAACCTGCCTCAAGCACAGAGACGGAGAATTTCAGTGCTACTGCAAACCAGGCTTTACAGGGAAAACATGCAGCTCCCACAAGATCAGAAACCCCAGACCCTCAGACCAAGAAACCAGCCACTCTCAGCACTACAGCTTGCCATCTCACGTGTTCCACAAGATGATGCATCATCAAGATCGAGAGGTCCTGAAGATCACGATGAAGGAAAGTGTCCACAGCTCCAATACCCTCATCAACAAAAGTCAAGTCATTTGTTTCATTGTGCTTGGCTTACTGACCTGTTTGGTTGTCCTAGGCACAACTGGCATTGTTTTCTTcaacaaatgtgaaatgtggcTGGCGAATGCAAAATACAGCCAGCTTGTGCGAAAGCAGAGGAATCTTTTCTTAAAAACCAACAACGGAGAAGACCACTCAGTGAAAATCATCCTGccagagaaaattaaattgacCAACTATGGAAAACACTACACTTCAATCTGAACTCTCCATCTTGATCTGCTGTCCCCATAACATACttctaaaacatgtaaataatttaGAATTCCACAGACACAAACGCAcctttacaaaacacaagacTTTCACACAAGATTTTCACACCATTGTCAATTTGCAAGGCTATCTAAGACTTGAGATACAATTGCATTGTTTAAccatgataataaaataatgccaCATCTGACTTTAATACTCCTAACTATTATGAAACTGGACTGATATGTACAAAGAAAACTGTCAAAACTGAAGTCCTTTACTATACTTTATTTAGCTGAAGCAAAGTATTGGTTCATCTACTCATCTACTGCTTTGTATGCCTTTATATCCAGCTCCTTCATCATCCAATGGGATTTGATTAGATCATTATGGCAAACAGAAACCATAAATCACAGATGTAATAAATTGAAAGAGCCAGAGTGGTGTAACCCTGGTTTTAGTACTTTtctgggatttaaaaaacaatgacaattgtAGTGAAGACATACTTGTCTGTGACATTCCTTAGACAGTTCTGAATTAAGCTGTACCATtagtctctctgtgtttctagTTTTAGGAGAAATAGTGAAAGTGTTGGCTATATtgtgaatgtttaaaattaagtgttttagAAATGTAGGTCTATAGTCACAAATTCAGTCACAAATTATAAATCCCATTAGCTGATGGCAGCTGTATGTTTGCCAGTAGCTTTTCTAGCTTCCAGCTAATTGTAACCTGCCATCAAATACTGGGAATTGTAGATTGTGATtggcagtttttaatttaatctgggtTTTGTAGAGCAATCCGAAGTACCACTTCAATCAGTATTTTACATCAAATTCTGCCAGTGTTACTTGATGAGCATGAACTGAGACAACAAACTGAAGTGTTGTTATGGTCTGAAGTGGTCTGAAAGATAGCCTCTAAGAGATGCCCTGACTATTTCCCAGGCCGAGATGATTCAGACCTGTAAGGCTTTGAAATGCGCCAAAGTGAACCTAGTGATAAAATTGTGAGATTAAAGTAAAAGCCATTTCTCTGCAGTTGTCATACAACAATCTGCAATGgataataactaagtgatatGATGTCACTGCACTAGCGATCAATGTGAAGTCCCTTTCCTTCTGTCTTTTGGCAATAGACATTTCTTCCAAAGGGTACAATTGGATGCATACTGTACTACAGTCTACCAAAACGTTAATTTCCTAACGTGTTCTTCcagagttttacattttcttacttGGGTAGCACTAATGAACATGTAGTAAAGATCTAACCCCTGCAATCATTCTGTTAATAAGAGTAATCAGAGAAAAGGCACTATGTGGTCATTCAACAACTCTCATGAGAGGCATTACATGAAAAAATGGCATTTGATAACAATGCACTGATCACCATAATTATAGGCCTAATAGTctctttttatcttttatttattttgaatcttCTTGATTCTTGACTTAAGTGATGTGCATTTTGCAGTCAAACCCCTTAATGGCTTTTGTTGAACTTACAGGAGTTTATGTATTTGATGGTTaacactgtaaatatatgaCAGGTTAAAAAAATCGCAGTATTTGATGATGGATTGTATAAGAAACTAGGAAGGCTGCCAACACAATAAAGCATAAGTATTGTGCTGTGGCCTAGACCTCTCTGTGCAGAACAGCATTTTCTGGTGTGATACTAATGAAGAACAGCACCAGATATCAAAGTTAAAGACAAATGGTGGTAGATTCCACTGTGCCTAATGTATTAATAGAACTACTAAGTTACACAGTTTCTAAACATACTGCAATTTACAGACTTTAAATTatggggaaattatttttactcTTTGTCATTAATTTTACCTGCAAAGTAAATTCAACAAATggtgattttcaaagcttttttctttaGAGCAAAATATTATACAAGTTTTCTGAAAGTAGCTGTAAAAAGATGCTAATTGAACGATATAAAATCACAGAGATTGGTAAAATGCAGTGCAACAAAAGACTTTGGAAGTTAAACTGTATTTACTTGTATATAACTCTGAGATTTGTACTTAAGATCAGTTAATGGTAATACACTATGTATAATCaacatatgaaaatatatctacatttgtatttacatcAACATCTATAGGACATTTCACAAAATGCTAATAATGTTAAATTTACCAAAATATGTCATATAGTATTATAGTGCAATGAAATTCCTTTATCTATTGGTCATATACTGTATTGAAAATCATAATGTAATGGCAAGAGATTAAATCCTGAACATCTAGAGGTTATTTAGGATAAAGGCTGAGCCAACAGAATAATAACCAGGGAAGACAAGGACTGTTTGGAAATCACTGAGCCAAGAAGACACTTCcagttaaaatatacagtattagaGACAAGGCTGCCTTTTCCTCTGTGTAATTCATTTTCctcttatttttcatattactATAAATGCTCAATCATAGGAATTTTCATCTGCCTTGAAATTCATGGCGACATGATGGATCATCCATTAAGGGGTTTGATGCATCAAACTGTATTGTGTATAATGTAAAGAAAGATAATAAAGCGCTGTTTAATGTCA

Function

GO: NA

KEGG:

id description
K24461 DLK1; protein delta homolog 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188432 lncRNA upstream 474599 12092387 ~ 12098372 (+) True G149747
TU188424 lncRNA upstream 545528 12027227 ~ 12027443 (+) True G149739
TU188352 lncRNA upstream 772231 11800000 ~ 11800740 (+) True G149674
TU188351 lncRNA upstream 773093 11799561 ~ 11799878 (+) True G149673
TU188350 lncRNA upstream 774964 11797375 ~ 11798007 (+) True G149672
TU188614 lncRNA downstream 254300 12833539 ~ 12841673 (+) True G149869
TU188779 lncRNA downstream 387736 12966975 ~ 12968142 (+) False AMCG00000381
TU188827 lncRNA downstream 833626 13412865 ~ 13413064 (+) True G150042
TU188855 lncRNA downstream 1070164 13649403 ~ 13650051 (+) True G150066
TU188905 lncRNA downstream 1160537 13739776 ~ 13746116 (+) True G150106
AMCG00000359 mRNA upstream 113033 12430058 ~ 12459938 (+) True AMCG00000359
AMCG00000358 mRNA upstream 150257 12418779 ~ 12422714 (+) True AMCG00000358
AMCG00000357 mRNA upstream 173448 12385408 ~ 12399523 (+) True AMCG00000357
AMCG00000345 mRNA upstream 208948 12356841 ~ 12364023 (+) True AMCG00000345
AMCG00000344 mRNA upstream 227272 12344867 ~ 12345699 (+) True AMCG00000344
AMCG00000366 mRNA downstream 129540 12708779 ~ 12709438 (+) True AMCG00000366
AMCG00000380 mRNA downstream 158416 12737655 ~ 12750364 (+) True AMCG00000380
AMCG00000377 mRNA downstream 185033 12764272 ~ 12784236 (+) True AMCG00000377
AMCG00000376 mRNA downstream 211141 12790380 ~ 12824958 (+) True AMCG00000376
AMCG00000368 mRNA downstream 299199 12878438 ~ 12884325 (+) True AMCG00000368
TU188404 other upstream 587256 11982460 ~ 11985715 (+) False AMCG00000352
TU188165 other upstream 2037834 10534590 ~ 10535137 (+) True G149525
TU188032 other upstream 2602170 9969324 ~ 9970801 (+) True G149424
TU187550 other upstream 3991859 8579717 ~ 8581112 (+) False AMCG00000249
TU187301 other upstream 5210264 7361020 ~ 7362707 (+) True AMCG00000217
TU188603 other downstream 100431 12679670 ~ 12727903 (+) True G149859
TU188861 other downstream 1111600 13690839 ~ 13692589 (+) True G150069
TU189044 other downstream 1553899 14133138 ~ 14153840 (+) True AMCG00000412
TU189714 other downstream 4356754 16935993 ~ 16938282 (+) True G150750
TU189794 other downstream 4966215 17545454 ~ 17548508 (+) True G150811

Expression Profile