RNA id: AMCG00000367


Basic Information

Item Value
RNA id AMCG00000367
length 2933
RNA type mRNA
GC content 0.49
exon number 2
gene id AMCG00000367
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 12943056 ~ 12948495 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

agatagaagaataaaaaaataagaattgccAGTGCATAATGGTATGAGATTAGTCATATTTCCTGAAAGCTACgcgtttataataataataatagcaaaagttttatatttttgcactaTATATCTGATCAAAAAGGACACCTAGTACAGTTTATAGTGTATTTAGTTTGTAAGGCAGTTGATCTGTTGGAGTCTGAGCCTTAACAACCGCTTTGTTTGTTAGCTACCATTTCAAAGACCGACACCAGGGTTACAGCAACACAGCACCGTGAACTGTGTAAGTAGACAATGCTTAAACAGTGTTCATGTGGTCATTATTGTGCTTAAAATCGTCATTTCTCTCTCTAATCCAAGATATCTATATACGAATGCGCACTAACTCAGCGGAGGGATACAGTTCGTTTGGAAAGGACGCAAAGTTTGAACGTCTCCAGTGTCTGCAACGAAACACCAACCATGGAGCCCGGATCGAAATATGAAGATTTAAATTTAACCCCAGAAGAGGTGGACCGCTTCAGCAAGGCGTTCAAGGACGAGAAATTCCGGCAGATGCTGTGGGAATATGCCGACGAGATCTCCAACCCGGAGAACAAGAAGAAGTACGAGGAGGAAATCGCGCAGATGGAGCAGGAGAGGGGCATGGACGTCCGATTCATCCACCCCGCGCCGGCCAGAGCCCTGAAGACCAGCGTGGGCGGCGGGCAGAAGTGCTTCATCAACATCTGCACCAACCACCTCATCCACAAGCCGGGGTGCAGGAAGAGTGATGCGGCAGAGGGGATGCATTGGACCCTGCCGTACAGCTTGACCCCGGGGAGGCAAGAAATGGACCCCAAGGGTAACAAGCACTGGATATACGACGTCGTGTTCCACCCCGACACGCTTCACATGGCCGGGAAAAACGACAGGTTTATGAAAATGATTGACAAGACGGCGATGGACGCCATTGAGGAACACTACAATGTCCAACTAGATGAGAGAAACGTCAAGGTGTTGAAAATGAAGTACAAGGGGGTCCCCCATCCCGCAGTGCTTCGCAAACCACTAGCGGACACAGTGACCGAAAAGGAACCGGCTGACCCGAATGACCCTCTGCGGTTCCCGTACCcctataacaacaacaacaacaacaacaacaacacacagaaacacacagtgcCATCAAAATACGTGGACGGTAAAACGGAGAAAGTCACCCCAGACCCAGCAGAACCCGGTCCACCTACGGAACCAAATTATAAGATGAAGTTCAGGTCGTACATTGACTTGCAAGATTACAGGTGTTCCCGCGATTCTGCCCCCAGTCCCCGACCCCGGGAGATCGTCATCACCGTGGACCTGCCTCTGCTCAGCTCCGCGGGGGAAACGGGCCTGGATGTGACCGAGAACCGGCTGCTCTTACAATCCCAGAAACCGGCGTACAGGCTGGACGTGACTTTACCTTACCCCGTGGACGAACAGCAAGGCCATGCCAGATTCATTAAAGGCACCAGACAGCTGGTTGTCACTTTGCCCGTGTTGCCGCTGAAGCAGGACCCGACAGCCGGAGCCGGCGGCCCGCAGCAGGTGGTGAGCGAAGCCCCAACTGGAGACGGCAGTGAACACGAAACCGCCACCTCTCAACTTCCAACATGGCAGGAAAGCAGTATCCCAGATGCCCCTGGAGCTGTAACAAACCACCCTTCATTACAGGTCCAAAATAAAGCATGTGTCACTGTATCCGAAGGCTTGAAGCTGGTTTCTGAATTGACAGAGTCGGCGATTGATGAGAGTCCAGATGTGTCTGAACCCCCAAACCACAACTGCGATGTCCCGCCATTCACTTCGGAGAGGGACGAGGTGACCGCAGACTGTGATGTGCATGGCCAAGGCGAGAGGGATGCTGACATCTCTCATCAATCTCAGgacaaacaaagtaataaacCAGGGGGAAAATCAAAAGCTGCATCTGTCTTCCACTCTAATATGGACAGCACTGTGAGAGAGGAGAACTCATCCCCCGGAGCGGCTATCCCAGAGACGGGGACAGATCCCAGAGCACAGGGACCGGCCGAAGACCCCGCCTCTCTCGCAGTATGCTGGCCTGGGGCTCAGAGCTCAGAGCGGAGTCCCAGTCCAGACATAACTGAACAAAGTACAGAGCCCGTAGCTGGCCATCTGCATCCCGATGAGCCTGCTTTTACAAGGGAGCAGACCACAGGCACACTAGATGTTGCCAGCACAGGTGAAACAGCCAGGAAAGAGGTGTGTTTCAAAGAGGAGGTCGCAGAAGCAGATGTGCCAGATCTTGATGAAGACGACCTCCCCACCGAGCAAGAGACTGAGTTCCCGGAGAGCGTGCCAGCCCCAGCTATCATTAGGGAAGTGAACACTATCGATGGAGAAGTTGAGGTCATTAGTAATCACACCACCTCAGCTGCGTTCTCATTTCACAACTCCCTTTTATATGAGCTGGATTAATGCTGTTTTCGTGCAGTTATTCAGTTGTGAATATATAAGTGTTTGCATTACGATTAAATAAGAATTAATCTAACTGATACAGGATTCACAGCCATTCTGCATTTCGTGTTGGTTAATGAGTGTTTTCAAACCGTTTCTGCCTGCCTgtgttatttaacatttaaaataagcacaggaaaattaaaaagaaaaacttccAGTACATTCAGAAGCTTTTTCCCATTATAGGTATTCTCTGGACATTCCTGTAGAGctgcttaaatacatttattctgtgAATTATTTGTCGTGAGTTCCCAAGCAGCTTTACAATTTACTTTCAGATCACTACATGTTTACTTTGAAGAGCAGTCCTTGCTAATTacaggagagaggaaaaaaacattcccaGCCTGCATTCAAGGACAGCTGCTCTTACAGGATTTACAAGCCTAACTGTGATATTggtagcaaaataaaaaccaaagcaaaat

Function

GO: NA

KEGG:

id description
K19751 DNAAF2, KTU, PF13; dynein assembly factor 2, axonemal

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188614 lncRNA upstream 101383 12833539 ~ 12841673 (+) True G149869
TU188432 lncRNA upstream 844684 12092387 ~ 12098372 (+) True G149747
TU188424 lncRNA upstream 915613 12027227 ~ 12027443 (+) True G149739
TU188352 lncRNA upstream 1142316 11800000 ~ 11800740 (+) True G149674
TU188351 lncRNA upstream 1143178 11799561 ~ 11799878 (+) True G149673
TU188779 lncRNA downstream 18480 12966975 ~ 12968142 (+) False AMCG00000381
TU188827 lncRNA downstream 464370 13412865 ~ 13413064 (+) True G150042
TU188855 lncRNA downstream 700908 13649403 ~ 13650051 (+) True G150066
TU188905 lncRNA downstream 791281 13739776 ~ 13746116 (+) True G150106
TU189157 lncRNA downstream 1516397 14464892 ~ 14465302 (+) True G150303
AMCG00000370 mRNA upstream 690 12932611 ~ 12942366 (+) True AMCG00000370
AMCG00000369 mRNA upstream 22925 12898142 ~ 12920131 (+) True AMCG00000369
AMCG00000368 mRNA upstream 58731 12878438 ~ 12884325 (+) True AMCG00000368
AMCG00000376 mRNA upstream 118098 12790380 ~ 12824958 (+) True AMCG00000376
AMCG00000377 mRNA upstream 158820 12764272 ~ 12784236 (+) True AMCG00000377
AMCG00000381 mRNA downstream 18382 12966877 ~ 13030853 (+) True AMCG00000381
AMCG00000384 mRNA downstream 378897 13327392 ~ 13338022 (+) True AMCG00000384
AMCG00000385 mRNA downstream 403837 13352332 ~ 13409859 (+) True AMCG00000385
AMCG00000386 mRNA downstream 660258 13608753 ~ 13617625 (+) True AMCG00000386
AMCG00000387 mRNA downstream 669993 13618488 ~ 13626756 (+) True AMCG00000387
TU188603 other upstream 215153 12679670 ~ 12727903 (+) True G149859
TU188404 other upstream 957341 11982460 ~ 11985715 (+) False AMCG00000352
TU188165 other upstream 2407919 10534590 ~ 10535137 (+) True G149525
TU188032 other upstream 2972255 9969324 ~ 9970801 (+) True G149424
TU187550 other upstream 4361944 8579717 ~ 8581112 (+) False AMCG00000249
TU188861 other downstream 742344 13690839 ~ 13692589 (+) True G150069
TU189044 other downstream 1184643 14133138 ~ 14153840 (+) True AMCG00000412
TU189714 other downstream 3987498 16935993 ~ 16938282 (+) True G150750
TU189794 other downstream 4596959 17545454 ~ 17548508 (+) True G150811
TU190029 other downstream 5205369 18153864 ~ 18159321 (+) True G150976

Expression Profile