RNA id: AMCG00000368


Basic Information

Item Value
RNA id AMCG00000368
length 3145
RNA type mRNA
GC content 0.44
exon number 3
gene id AMCG00000368
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 12878438 ~ 12884325 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTGCTGATTTAAGTAAACCTATAGACAAGAGGATATACAAGGGAACACAGCCCACCTGTCATGACTTCAACCACCTGACTGCCACGGCAGACAGCGTCTCCCTGCTGGTGGGGTTCTCCGCAGGCCAGGTGCAGCTCATAGACCCCATCAAGAAAGAAACTAGCAAGCTGTTTAATGAAGAAAGGCTAATAGACAAGTCTCGGGTCACCTGTGTGAAATGGGTTCCCGGGTCCGAGAGCCTTTTCCTCGTAGCTCATTCCAGTGGCAATATGTACTTGTATAATGTGGAACACACTTGTGGAACCACAGCCCCACACTACCAGATGCTGAAACAGGGTGAAAACTACGCTGTGCACACTTGCAAGAGCAAATCCACAAGGAACCCCTTGTTAAAATGGACGGTGGGAGAGGGGGCACTCAACGAGTTTGCCTTCTCCCCAGATGGGAAATTCCTCGCTTGTGTCAGTCAGGACGGCTTCCTCCGGGTTTTTAATTTCGACTCGGTGGAGCTGCACGGGACAATGAAAAGCTACTTTGGGGGGTTGCTGTGTGTCTGCTGGAGTCCGGATGGCAAGTACATTGTCACCGGCGGAGAAGACGACCTGGTGACCGTGTGGTCTTTTTTAGATTGCAGGGTAATAGCAAGAGGCCACGGACATAAATCTTGGGTGAGTGTGGTGGCCTTTGACCCTTACACTACGAGCGTGGAGGAGAGCGACCCAATGGAGTTCAGCGGGAGTGATGAGGACTTCCAAGACCAGATCCACTTTGGTCGGGACAGGGCGAACAGTACGCAGTCCCGGTTGTCCAAAAGGAACTCCACCGACAGCCGCCCAGTCAGCGTCACGTACCGGTTCGGTTCCGTTGGACAGGACACTCAGCTGTGTTTATGGGACCTGACAGAAGACATACTgttcccccacctccccctttCCCGTACAAGAACGCATACGAACGTCATGAACGCCACCAGCCCCCCCACGGGCAGTGGTGCGATCAACCCGGGCAGCAACGGGAACAACAGCATAAGCAGCATCCCGGGCAACTCCTTACCCACTCAGCTTCCTCGATCCAACAGCCTTCCGCACTCGGCGGCCGCCACCACCAACAGCAAGAGCAGCGTCGTGGACAGCGCCATCGCGTCGGGTGTGAGCAAGTTCGCCACACTCTCATTGCACGACCGCAAGGAGCGGCACCACGAGAAGGATCACAAAAGGAACCACAGCATGGGACACATCACCAGCAAAAGCAGCGACAAGCTGAACCTGGTCACGAAAACTAAAATGGACCCCGCAAAGACTTTGGGAACCAATCTCTGTCCTCGGATGGAAGATGTTCCCTTGTTAGAGCCTCTTATCTGTAAAAAGATAGCACATGAAAGACTCACTGTCTTGATATTTCTCGAGGACTGTATAGTAACTGCCTGTCAGGAGGGATTTATTTGCACATGGGCGAGGCCTGGCAAAGTGgGTTTATTGTCATCCCAAAACCAAGCCAACTCTCCCAGTGGGACTGTAGTATAGCCATCATAATTCTGCTGCTAAGAAATCTTCATCACAGAGACGTAATGACGCCAGAGCCAGACGCTGTTCTTCATCCGCACAGCattgcaagttttttttgttttgtttcaatttgttttgtttttcctgaaatGGCCTAGCGTGAGGTAGTGGTCTGCAAGCTCAAATGGAAAGGGTGAGGTGCAATTTTGGACGAATTTTGGTAAAATCGTCCTTGAAATTAAACCctgcaggatttatttattctcgCCCACTCTCCCCGGCCTCTTCtacttttacacacacaaacacacacacacctgccccCCATGTATGTTTTTACTACACTTTTCCACTGGAGTCGCGGTACAGAGCTTGAGAAAATCAGAAGCAAATTGATCAGCCGATTCCTCAAGTCTGTGTTTCCGCCATCTCCAGTTGTGTTGTCATTGTATCCCatttataatgcaaaaataattaaatggaagagaaaggaaaacCAATGCTTCCCTAAAGATATatccctgtattttttttttttcttttaacttaaATTAGTATCTCACCATTGAATACTTTGCActgattattttctgttttattatataactATATTGGATGAAAAAAAATTTTTGAAGACAGCCTTGATGCACTTGGGGTATGGCAAGTCATTATCTTCTGGcttgaaatgttgaaatggaAAGCTGGATTCTgcaatcagttttttttttttttatggaaaaagaaaaataatttgtttgcaCTTAATAGTTTGTTAGAAGAGAATGGCTTTACAATTTGGGGTGTGCGAGGACTCCCAGACAGCTATATAAggtgaagaaaatattaaaaaatgaaacctttgTATCTAttgagcatttattttaatattgtttcaaattacaATCGGCTctgtattatatgtataaatattgtaattcagTGATTGATGGGGCAAAAATTGATCATTACACTAGTGGAAGTTCATCTTCATTAAAGCAAAATAGTGATATTTCTAATGCagaaaaattatacatattaataatattaaaacaatcttgaatatgcaggtttttgttttcttttctgttgtacaaaaaaaaagatcattcagatgtatttttcttaattaaatgtttggtaTAGGAGAACTCTTTGTATCCAATGCTATTATGTCCAGGAAGAAGCTGAAATGCTTACTTgttacaaatttacaaaatgtacagaagtAGGGCAGAGTAACCGTCAAACTCAGCAATTATTTGAAGCTCAGGAAGTCAGCCGACTAAAATAAAAGATCAGAAATGCTATTCTATGTAAAGTTTAGTAGCATCCACTAGGAACAACTAGGTTCAGGGTTCAGCAGGATCCCTCTCCGTGTGACACTattaaaacagacttttaatgTACTTACCTTTTGTGCTTTCCAATCTTTCATGTCAATGGCCACTTTGAATTACTGCACACTACAAGGACATGGCCAGCCCAGCAAAGTGGTTTTACCagttttacatttcactttttctttcttcattaaaaaaatatggttTACAAGGAGCCTGGTGCTTGTACAGTTACTTAAGTTGTCTTTCTGCCGTTATAACTGACAATGGGTGCATATTCATCTGAATCTGAACATTAA

Function

GO: NA

KEGG:

id description
K24741 WDR20; WD repeat-containing protein 20

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188614 lncRNA upstream 36765 12833539 ~ 12841673 (+) True G149869
TU188432 lncRNA upstream 780066 12092387 ~ 12098372 (+) True G149747
TU188424 lncRNA upstream 850995 12027227 ~ 12027443 (+) True G149739
TU188352 lncRNA upstream 1077698 11800000 ~ 11800740 (+) True G149674
TU188351 lncRNA upstream 1078560 11799561 ~ 11799878 (+) True G149673
TU188779 lncRNA downstream 82650 12966975 ~ 12968142 (+) False AMCG00000381
TU188827 lncRNA downstream 528540 13412865 ~ 13413064 (+) True G150042
TU188855 lncRNA downstream 765078 13649403 ~ 13650051 (+) True G150066
TU188905 lncRNA downstream 855451 13739776 ~ 13746116 (+) True G150106
TU189157 lncRNA downstream 1580567 14464892 ~ 14465302 (+) True G150303
AMCG00000376 mRNA upstream 53480 12790380 ~ 12824958 (+) True AMCG00000376
AMCG00000377 mRNA upstream 94202 12764272 ~ 12784236 (+) True AMCG00000377
AMCG00000380 mRNA upstream 128074 12737655 ~ 12750364 (+) True AMCG00000380
AMCG00000366 mRNA upstream 169000 12708779 ~ 12709438 (+) True AMCG00000366
AMCG00000365 mRNA upstream 299199 12572971 ~ 12579239 (+) True AMCG00000365
AMCG00000369 mRNA downstream 13817 12898142 ~ 12920131 (+) True AMCG00000369
AMCG00000370 mRNA downstream 48286 12932611 ~ 12942366 (+) True AMCG00000370
AMCG00000367 mRNA downstream 58731 12943056 ~ 12948495 (+) True AMCG00000367
AMCG00000381 mRNA downstream 82552 12966877 ~ 13030853 (+) True AMCG00000381
AMCG00000384 mRNA downstream 443067 13327392 ~ 13338022 (+) True AMCG00000384
TU188603 other upstream 150535 12679670 ~ 12727903 (+) True G149859
TU188404 other upstream 892723 11982460 ~ 11985715 (+) False AMCG00000352
TU188165 other upstream 2343301 10534590 ~ 10535137 (+) True G149525
TU188032 other upstream 2907637 9969324 ~ 9970801 (+) True G149424
TU187550 other upstream 4297326 8579717 ~ 8581112 (+) False AMCG00000249
TU188861 other downstream 806514 13690839 ~ 13692589 (+) True G150069
TU189044 other downstream 1248813 14133138 ~ 14153840 (+) True AMCG00000412
TU189714 other downstream 4051668 16935993 ~ 16938282 (+) True G150750
TU189794 other downstream 4661129 17545454 ~ 17548508 (+) True G150811
TU190029 other downstream 5269539 18153864 ~ 18159321 (+) True G150976

Expression Profile