RNA id: AMCG00000370


Basic Information

Item Value
RNA id AMCG00000370
length 2278
RNA type mRNA
GC content 0.43
exon number 12
gene id AMCG00000370
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 12932611 ~ 12942366 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTGGGCAGGTTAGTTGAAGCTTATCTTGAAGTGGCTTTGATGGCCGATACGCAGATCTTAAGAGTTGTGGCCCAAAAGCGAAGTGGTCACACGGCAGTAGTGGATGGCAATCATCtgtatgtgtgggggggataTTTGTCAATTGATGACAATGAAGTTTATCTTCCCAGTACTGAAATGTGGTTGTACGATATGGATAGTGGCGTATGGGATATGCATTTGGCAGAAGGAGACATTCCTCCCCCCATGTCAGGGACCTGTGGTTGCTGTGTGAATGGAGAAATGTACATCTTTGGAGGGTTTGATGACAATGGATATACTGATAAgAAAATTAACAGCAAAGGTAGCCCACCAACACCAAGAGATAAACTGTCCTGCTGGGTCTATAATGACAGGATTATCTACTTTGGTGGCTACGGCTATAAAGAACTTGGTGACCTGAATGACTCCTCCATCTTCACTGTAGATGAAGCTTCTTGGGTGGGGGACGTATTTCTGGGCTGGAACAACGAAGTACATGTGTTTGACCCAAGTACAGTAACCTGGAATGAACCAGACACAACCGGTTCCCCCCCGGCTCCCAGGGCTGCCCACGCCTGTGCCACTCTGGGTAGCAAAGGATATGTTTGCGGTGGTCGAGTCGGGGGCACCAGGACTAATGATGTGTACTGTCTGGATCTGGAATTGTGGAAGTGGTCAGAAGTAATTCCCAAGTCTGCCAAAGCACCAGGCGGCCGCTCCTGGCACACTCTCACGGCGGTGGCTGatggtgtgttgtttttatttggtggGCTGAGTGCAAACTGTGAGCCTCTGAGTGATTGCTGGTCACTCAGCGTCCACAACAAACAATGGAAGGAACTGGAGCACCTTAATAAGAATAACCCCAGGTTGTGGCACACTGCCTGCCTAGGAAAGGAATCGGAAGTCATAGTTTTTGGGGGAAGCCGGCATGACCTGCTCTCAGTAGACACAGTTGTGCGCGGACAGCATTGGGAAAAATGCCAAGATGCTTCAAGAACAGCTGTCTTGGTTACCCCGAAAACTTGGTTGGGCAATACaaaaaaggatttcattttttgcGCCAGCTGGAAAATTGAATTGAACAAGCAGTTCCACATTCACGTTGATGCACGCTCAAAGACGTctcccaaaaaaataaatatgcaggaATTCATTTGTTGATGGAAGCcaacaaatgtaaaaactgcAATAACTATTTCGGCCCATGTAATAAAAATTGAACTAAGGAATCGGAGTGGGAAAGCAAAACACCCCAAGTGGCCAATGAGACAGGATtgctcaatatttattttcattgccattttcatgtaattaattcagagttaatggcaaatacaaaaaacgTATTGTTGAAATTACACTTCCAGAAACAATGACAGatctcctttttaaaataagacagAAACTCAGGTACGAGGAGTCCAACTTTTCCTTTTACCTCTGGTTCAGCAGAGAAAACAGAATAGTCTGCATATGAAGACCCCGGTACCCAACATGGTTCCAATTTTGAGATCCAGACATGATAACAGACATTAAAAGTCAAAACATCAATGACGGAAAATCTCAAACGGCGGGGAGGGGAGGGAGCAGACTTAACACGTCAGCTCATCTTTATAGGCTGTGAAAACTGTATTGAAGATGCTTGTAAGAAATAGGTCACACCACTTTCCTCACCTGGTGTCTCTGGGTGGGGAGATAAACTGGCTATGACTCATGGTTCCACTCCCACAGCCAGCTATTTCAGACcttgtttaaattaatgttttaacgCATTTTGattattactttatatatttaacccTACATGTGTTTCCTGAATGCAGTTCTTTGATCTTCCCATACTGTAACTGTCTAATTTCATAAGTATTACAGGAATGTCTTACATTGTATTAGATCTTATattgtttcaggctgttgttttcCTTTGGTATTATATCAGAGATAATCTAAGCAGCATTGGGATATGAAGTCTTAAAACCTTGCTAATAGGTCAGCAGtggaaagtattttaaatgctaCAATACAAGAGGGATGCATCTGTGTGTATAGTTCATTAACAGTGCACTTACTTTAAAAGGATTCAAGTACTTCAACCACTGCAGTTTCAGAACAGCAAGTGATTAACTGCACTGGTTGTACAGTTCCAGCCTATTACAGTATACCACTTTCTGtatgtttctttcctttttttactaAATGTATATGTGGGTTCAGTGCTGCCAGTGGTACAATCTGGGGAATAAATGCCTTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188614 lncRNA upstream 90938 12833539 ~ 12841673 (+) True G149869
TU188432 lncRNA upstream 834239 12092387 ~ 12098372 (+) True G149747
TU188424 lncRNA upstream 905168 12027227 ~ 12027443 (+) True G149739
TU188352 lncRNA upstream 1131871 11800000 ~ 11800740 (+) True G149674
TU188351 lncRNA upstream 1132733 11799561 ~ 11799878 (+) True G149673
TU188779 lncRNA downstream 24609 12966975 ~ 12968142 (+) False AMCG00000381
TU188827 lncRNA downstream 470499 13412865 ~ 13413064 (+) True G150042
TU188855 lncRNA downstream 707037 13649403 ~ 13650051 (+) True G150066
TU188905 lncRNA downstream 797410 13739776 ~ 13746116 (+) True G150106
TU189157 lncRNA downstream 1522526 14464892 ~ 14465302 (+) True G150303
AMCG00000369 mRNA upstream 12480 12898142 ~ 12920131 (+) True AMCG00000369
AMCG00000368 mRNA upstream 48286 12878438 ~ 12884325 (+) True AMCG00000368
AMCG00000376 mRNA upstream 107653 12790380 ~ 12824958 (+) True AMCG00000376
AMCG00000377 mRNA upstream 148375 12764272 ~ 12784236 (+) True AMCG00000377
AMCG00000380 mRNA upstream 182247 12737655 ~ 12750364 (+) True AMCG00000380
AMCG00000367 mRNA downstream 690 12943056 ~ 12948495 (+) True AMCG00000367
AMCG00000381 mRNA downstream 24511 12966877 ~ 13030853 (+) True AMCG00000381
AMCG00000384 mRNA downstream 385026 13327392 ~ 13338022 (+) True AMCG00000384
AMCG00000385 mRNA downstream 409966 13352332 ~ 13409859 (+) True AMCG00000385
AMCG00000386 mRNA downstream 666387 13608753 ~ 13617625 (+) True AMCG00000386
TU188603 other upstream 204708 12679670 ~ 12727903 (+) True G149859
TU188404 other upstream 946896 11982460 ~ 11985715 (+) False AMCG00000352
TU188165 other upstream 2397474 10534590 ~ 10535137 (+) True G149525
TU188032 other upstream 2961810 9969324 ~ 9970801 (+) True G149424
TU187550 other upstream 4351499 8579717 ~ 8581112 (+) False AMCG00000249
TU188861 other downstream 748473 13690839 ~ 13692589 (+) True G150069
TU189044 other downstream 1190772 14133138 ~ 14153840 (+) True AMCG00000412
TU189714 other downstream 3993627 16935993 ~ 16938282 (+) True G150750
TU189794 other downstream 4603088 17545454 ~ 17548508 (+) True G150811
TU190029 other downstream 5211498 18153864 ~ 18159321 (+) True G150976

Expression Profile