RNA id: AMCG00000394


Basic Information

Item Value
RNA id AMCG00000394
length 2831
RNA type mRNA
GC content 0.55
exon number 8
gene id AMCG00000394
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 13731513 ~ 13739622 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAAGCCACTAGCGGTACGTGTTTGTTATGCGTGACGCTTGGGACGCTGGGGGTTGTAGTCCTTTATTTTGAGGAGgttacgagagagagagagagagagggaagagcaGGGAGAGACGGGAAGGAAGGGTACGGAGAAGGACGCAGCGTAACGTGAAGCAGGCGGACCGGGGCTGCTGCTGACTAAATGCATAAGCGACGACCGCGGTTCCTGCTGCCGGGCTCCTCTCCGCCGCCGCAATAAACACACGTCTGATCGGCACAGAGAAGCGCAAAACAGATGGACCAGCAAGCCCAGTCCTACATGCTTGCCAGTCTGACACGGCCGCACTCCGAGCAGCTCTTGCAGGGCCTGCAGCTCCTCCGGCAGCACCGCGAGCTCTGTGACATTGTCCTGCGTGTCGGGGACGCCAAGATCCACGCTCACAAGGTGGTGCTGGCGAGCATCAGCCCCTACTTCAAGGCCATGTTCACGGGAAACCTCTCGGAGAAGGAGAACTCGGAGGTGGAGTTCCAGTGCATTGATGAGGCGGCACTGCAGGCTATCGTGGAGTACGCGTACACTGGCACTGTGTTCATCTCCCAGGACACTGTGGAGTCCCTGCTGCCCGCTGCCAACCTGCTGCAGGTCAAGCTGGTGCTGAAGGAGTGCTGTGCCTTCCTGGAGAGTCAGTTGGACGCTGGCAATTGCATCGGCATCTCCCGGTTCGCCGAGACGTACGGCTGCCATGACCTCTTCCTGGCCGCCACCAAGTTCATCTGCCAGAACTTCGAGGAGGTGTGCCAGACAGAGGAGTTCTTTGAGCTGACGCGGGCCGAGCTGGACGAGATCGTGTCCAACGACTGCCTGAACGTGGTGACGGAGGAGACGGTGTTCTACGCCCTGGAGTCCTGGATCAAATACGACGTGACGGAGCGGCAGCAGTACCTGGCCCAGCTGCTGCACTGCGTGCGTCTGCCCCTGCTCAGCGTCAAGTTCCTCACCAGGCTGTACGAGGCCAACCACCTCATCCGAGATGACCACGCCTGCAAGCACCTGCTCAACGAGGCGCTCAAGTACCACTTCATGCCCGAGCACCGGCTGTCCTACCAGACCATACTGTCCACCCGGCCCCGCTGCGCCCCTAAGGTGCTCTGCGCTGTGGGAGGCAAGGCCGGGCTGTTCGCCACGCTGGAGAGTATGGAGATGTATTTCCCTCAGACAGACTCCTGGATCGGGCTGGCGCCTCTCAGCGTCCCGCGGTACGAGTTCGGCATCGCGGTGCTGGACCAGAAGGTGTACGTGGTGGGGGGAATCGCCACGCACATGCGCCAGGGCATCAGTTACCGGCGGCACGAGAGCACCGTCGAGAGCTGGGACCCCGACACCAACACGTGGGTGGCCGTGGAGCGCATGGCGGAGTGCCGCAGCACGCTGGGAGTGGTGGTGCTGGCGGGGGAGCTGTACGCGCTGGGTGGCTATGATGGACAGTACTACCTGCAGTCGGTGGAGAAGTATATCCCCAAGGTGAGGGAGTGGCAGCCTGTGGCGCCCATGATCAAGTCCCGGAGCTGCTTCGCCACAGCCGTGCTGGACGGCATGATCTACGCCATCGGGGGCTACGGCCCTGCACACATGAACAGTGTGGAGAGGTACGACCCCAGTAAGGACTCCTGGGAAATGGTGGCCCCGATGGCGGATAAGAGAATAAACTTTGGGGTGGGCGTCATGCTGGGGTTTATATTTGTGGTGGGCGGACACAACGGCGTCTCTCACCTAGATACGACCCTCATCAGAACCACTGGACGGCGGGTGGGCGCAGCCATCGTGGATAACTACCTCTATGTGGTCGGGGGTCACTCGGGGTCGTCGTACTTGAACACAGTCCAGAGGTACGACCCCATCACAGACAGCTGGCTGGACTCCAGCGGCATGAAGTACTGTCGCTGTAACTTCGGCCTGACTGCCCTCTGACCGTTAGAGTGACTGGACTACAGGGAGGTATGGACTGGTGGGTTGTTGCTTGTTGTTTTCGTTTTTggtcagttttgtttgtttattttttttaagtgggtGGTAGGAGGATGTGAATAGGGTATGAGGAAAGGaggtgaagaaaaagaagaatgtgAAACTAAAAAGTAGGATAAGTACCCATTTTTCTGGATGGGACTCAGACGTTGAATTCTGCATGATGTGTTTTGGCGAGAGGGTCTTGAGGAAATGGGAACTAAAGGAGATGGAATGACTGGAGATGAACAAAGAGGAAACGGCGAACAGCTGCCGATGCCGGGTGGGACTAGGAGCTGTGCGTGGACGAAGCAGGAAGAGGCTGGGCGCTACGCTGTTTGATTTCTGCTGGAGTGGAGCAGAGGGCTGCCCTAACCTGGTGCCCAGTGGAGAAAAGGAGGAGGTACCAGTCAGGGGTAGAAAGGCAGCCACATTTCTGCAATCTTTGTggtttttataatgtattgttcttTTCCCCCCCCTTAGCTGCACTCCAGGTTTTAATggtcgtttttgttttgttttgtttaatattgtttttatttatttagttttacatttttcgtatttacatttttccaatGCTATTGGCGGTTGGCAGAGAAACGCTGTTTTCTTTACTAAtccttagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtagggttGAGAGTAtcggtgtgtgtttgtggtttgtctgactgactgactgtagcCTGGAGGTTGCATTTCTCCGGTCACAAGAAGTCTGACTGCATCTGTTAACGTAAAACGAACCAAtgcttcacagaaaaaaaaaaaaagaaaaaactttatACAAACTTGTTCACTTAAAAAGGG

Function

GO: NA

KEGG:

id description
K10464 KLHL28; kelch-like protein 28

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188855 lncRNA upstream 81462 13649403 ~ 13650051 (+) True G150066
TU188827 lncRNA upstream 318449 13412865 ~ 13413064 (+) True G150042
TU188779 lncRNA upstream 763371 12966975 ~ 12968142 (+) False AMCG00000381
TU188614 lncRNA upstream 889840 12833539 ~ 12841673 (+) True G149869
TU188432 lncRNA upstream 1633141 12092387 ~ 12098372 (+) True G149747
TU188905 lncRNA downstream 154 13739776 ~ 13746116 (+) True G150106
TU189157 lncRNA downstream 725270 14464892 ~ 14465302 (+) True G150303
TU189234 lncRNA downstream 993610 14733232 ~ 14733440 (+) True G150364
TU189295 lncRNA downstream 1192156 14931778 ~ 14939473 (+) True AMCG00000443
TU189297 lncRNA downstream 1192156 14931778 ~ 14944400 (+) False AMCG00000443
AMCG00000395 mRNA upstream 41115 13687967 ~ 13690398 (+) True AMCG00000395
AMCG00000388 mRNA upstream 51584 13667889 ~ 13679929 (+) True AMCG00000388
AMCG00000387 mRNA upstream 104757 13618488 ~ 13626756 (+) True AMCG00000387
AMCG00000386 mRNA upstream 113888 13608753 ~ 13617625 (+) True AMCG00000386
AMCG00000385 mRNA upstream 321654 13352332 ~ 13409859 (+) True AMCG00000385
AMCG00000396 mRNA downstream 15186 13754808 ~ 13759231 (+) True AMCG00000396
AMCG00000401 mRNA downstream 19685 13759307 ~ 13759834 (+) True AMCG00000401
AMCG00000404 mRNA downstream 53636 13793258 ~ 13805747 (+) True AMCG00000404
AMCG00000403 mRNA downstream 73443 13813065 ~ 13837190 (+) True AMCG00000403
AMCG00000402 mRNA downstream 117016 13856638 ~ 13870201 (+) True AMCG00000402
TU188861 other upstream 38924 13690839 ~ 13692589 (+) True G150069
TU188603 other upstream 1003610 12679670 ~ 12727903 (+) True G149859
TU188404 other upstream 1745798 11982460 ~ 11985715 (+) False AMCG00000352
TU188165 other upstream 3196376 10534590 ~ 10535137 (+) True G149525
TU188032 other upstream 3760712 9969324 ~ 9970801 (+) True G149424
TU189044 other downstream 393516 14133138 ~ 14153840 (+) True AMCG00000412
TU189714 other downstream 3196371 16935993 ~ 16938282 (+) True G150750
TU189794 other downstream 3805832 17545454 ~ 17548508 (+) True G150811
TU190029 other downstream 4414242 18153864 ~ 18159321 (+) True G150976
TU190161 other downstream 4677558 18417180 ~ 18419471 (+) False AMCG00000550

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00023382 True 2555 mRNA 0.54 5 NC_007128.7 599084 ~ 608857 (-)
grasscarp (Ctenopharyngodon idella) CI01000060_00247020_00249297.mRNA True 951 mRNA 0.59 2 CI01000060 247020 ~ 249345 (+)