RNA id: AMCG00000395


Basic Information

Item Value
RNA id AMCG00000395
length 1113
RNA type mRNA
GC content 0.48
exon number 6
gene id AMCG00000395
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 13687967 ~ 13690398 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTTTTTGTTAGGCACTGTTTGCACCGAAAGCCAAATAAGCCAAAGCACATGTTTCCTGTCTCCTCCCACAGTGAGGGGTGAAAGGTCATCGACTTGAGGTGTAAGATGGCCGCTGAACCAAGCAAGCAATGGAGCGAAGAGCAGCTGAAAAGTGATGATCTACCCAAGAAAGACATCATTGCATTTTTGCAAGACAACGCTGCTAACTCGTTTCTTGCAGAGCACAAACTGATGGGGAATATCAAAAATGTTGCCAAAACTGCAAAGAAGGAGAATTTAGTTTCAGCCTACAATCAACTGTTCGAGAGCAAGAGATTCAAGGGCACCGACCCCGTGGAGGACGTGACGCAGCAGGTCAAGGAGGTGAAGATCGAAGACAAGCCAAAAGACACCAAGGCAGCAGAACCGGTGGATGAGGGGCCTCCTAGATACACTAAATCTGTGCTGAAGAAGGGAGACAAGGCCAGCTTCCCAAAGAAAGGTGACACTGTGAGCTGCTGGTACACTGGGACTCTGGAGGACGGCACAGTCTTCGATACCAATGTAGCCGCAACTGCCAAGAAGAGGAAGTCAAGCAAACCCCTGAGCTTCAAGGTTGGAATGGGGAAAGTCATTCGAGGGTGGGATGAGGCCCTGCTGACCATGAGCAAGGGAGAGAAGGCCTGTCTGGAGATAGAGCCCGAGTGGGCATACGGCAAGAAAGGGCTGCCCGATGCCAAGTATCCTTTGCTGCAGAGCACGAGTCACCATCTCTCAGTCGTAGCGTATCGACAGCCTGTTTATAATCTGACGCTAGGGCCTGCAAAAGTGCTTACGTAGATAATGAAGACTTTGGAGATGCAAAGGGGATATTTGGTTGCCCCAAAAAGCATCAGAAATGTCTTTGTTGATTTGAATTGTTCCCATGGCAGAGATACCTAGAGTGTATGTTTTACCTTGAAGTGCAGTTTTACAATATTCCTAGGATTCTGTGTAGGAGAGGGTTGTGCATAACTCTGAACCAGTAGGAATGGTTATTTGGAGCAAGAAATCAAAAACTAGGCAGAATTAGCACAGGGGCTTTACAGATTTCTCTGGCAGAACCCCTGTTCAAAGTAAGGCCTTGATGGCTG

Function

GO:

id name namespace
GO:0000413 protein peptidyl-prolyl isomerization biological_process
GO:0006457 protein folding biological_process
GO:0003755 peptidyl-prolyl cis-trans isomerase activity molecular_function

KEGG:

id description
K09570 FKBP3; FK506-binding protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188855 lncRNA upstream 37916 13649403 ~ 13650051 (+) True G150066
TU188827 lncRNA upstream 274903 13412865 ~ 13413064 (+) True G150042
TU188779 lncRNA upstream 719825 12966975 ~ 12968142 (+) False AMCG00000381
TU188614 lncRNA upstream 846294 12833539 ~ 12841673 (+) True G149869
TU188432 lncRNA upstream 1589595 12092387 ~ 12098372 (+) True G149747
TU188905 lncRNA downstream 49378 13739776 ~ 13746116 (+) True G150106
TU189157 lncRNA downstream 774494 14464892 ~ 14465302 (+) True G150303
TU189234 lncRNA downstream 1042834 14733232 ~ 14733440 (+) True G150364
TU189295 lncRNA downstream 1241380 14931778 ~ 14939473 (+) True AMCG00000443
TU189297 lncRNA downstream 1241380 14931778 ~ 14944400 (+) False AMCG00000443
AMCG00000388 mRNA upstream 8038 13667889 ~ 13679929 (+) True AMCG00000388
AMCG00000387 mRNA upstream 61211 13618488 ~ 13626756 (+) True AMCG00000387
AMCG00000386 mRNA upstream 70342 13608753 ~ 13617625 (+) True AMCG00000386
AMCG00000385 mRNA upstream 278108 13352332 ~ 13409859 (+) True AMCG00000385
AMCG00000384 mRNA upstream 349945 13327392 ~ 13338022 (+) True AMCG00000384
AMCG00000394 mRNA downstream 41115 13731513 ~ 13739622 (+) True AMCG00000394
AMCG00000396 mRNA downstream 64410 13754808 ~ 13759231 (+) True AMCG00000396
AMCG00000401 mRNA downstream 68909 13759307 ~ 13759834 (+) True AMCG00000401
AMCG00000404 mRNA downstream 102860 13793258 ~ 13805747 (+) True AMCG00000404
AMCG00000403 mRNA downstream 122667 13813065 ~ 13837190 (+) True AMCG00000403
TU188603 other upstream 960064 12679670 ~ 12727903 (+) True G149859
TU188404 other upstream 1702252 11982460 ~ 11985715 (+) False AMCG00000352
TU188165 other upstream 3152830 10534590 ~ 10535137 (+) True G149525
TU188032 other upstream 3717166 9969324 ~ 9970801 (+) True G149424
TU187550 other upstream 5106855 8579717 ~ 8581112 (+) False AMCG00000249
TU188861 other downstream 441 13690839 ~ 13692589 (+) True G150069
TU189044 other downstream 442740 14133138 ~ 14153840 (+) True AMCG00000412
TU189714 other downstream 3245595 16935993 ~ 16938282 (+) True G150750
TU189794 other downstream 3855056 17545454 ~ 17548508 (+) True G150811
TU190029 other downstream 4463466 18153864 ~ 18159321 (+) True G150976

Expression Profile