RNA id: AMCG00000396


Basic Information

Item Value
RNA id AMCG00000396
length 1432
RNA type mRNA
GC content 0.57
exon number 3
gene id AMCG00000396
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 13754808 ~ 13759231 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTGGACAAATTGAGCTCCGCCAGCACCTCTGGGTCTGGGAAGAAACCCCTTCTCAACTCAGCAAGGAAGCCCTGCCCCTCTTTCCCAGCCCTGCATATGTTACAGCCAAGCGGTGAGAGAGTGGAGGGCATGGGATCACAGAGAGGTGAGTGTGCGACTGAGGCAGAGCAGCTGGGGTCCAAGTTGGTGGGAGAGAATCAGAGCAGGGATACAGAAAGGTGGGCCAGCAGTTATGTGGAGCAGCCTGGGATGGGGGAGAGTGCTCAAGGGAAGAGGCTGAGCAAAAGGAGCCACAGCAAACCTGACTGGGCCCGCCTGTCCTTCGAAGACATCAAACACCGGCACAGAGCCAGGCTCCGCACACAGGAGCCATTCAGGAAGTGGCATCACCTGCTGCTGTCTGTCCCCGGCCCCTCTGTCTCGGCACACTTCCACTGTGAGTCTCACTGGGACCCACAGAACCCCTGTCCCCTTCTGCCCTCGGGTCCAGGTCACAGGAAGCTGGGGCTCTCTGTCAGTGTGGGTCAGAAACTGGGAACTCTGGTGCCTAGCCGCCGAGCTGAGCGACTGAGAGCGGGCGAgcaggcgagagagagaggcgagAGCGGGGTGGATCAATCCGGGGACCGGGGGGCCGCAGAGCAGGGAGACGAGCAGAGGAAGCGCTCGGATGAGCCGATGACCTTTGGCGTTGCCGCAGCCCAAGCTGTTCCGTCGCCGACCGACGTGCGGGAGACCCGGCGGGAGCCCGAAGCCAGGACTcgctgaaacaaacaaaaaaccgaATCGGGGCCGGCGGACACCGCGGAGGAGACACGCCAAGAGGAAGTGTGCGAACTACGGCAGGCTTTCGAGAGGGCCTGCTCGGAGACCGTGCTGCTCCTCCAGCCGagtcacttttttatttttgaagttgaTCCCCCCTTTTCCGAGGACGTGCAGGCCCGGTTTTTTAGGGGACGCCTGTGTGGATACCGGCGCTTTTCCTGAATCCGGATTTGAAATCGCTGTCCCCCCACACCCTCTTTGTAAAGGCAGCTGGATTCCTGCGCTCTTGTGACGGCCGTGATGGCCTCGTTTGACTTGTGATTGCCCCAAACGTGCCACCTGTGTCTTTTGTAGAGGATCTCTGACTGCCCTGGTGTCCTTGTGGATTATCCTGGCTGTTCAGACGAGAGACACCGAGAGGGAGTCGTCTATTCACATGGACACATTGTTGCTACTGTATCGGCATTGAAAGTTGCTTCATTGTTTACAACTGTATCCACTTCTGCTGCCAGCTGTCATTTTTTGAATTTCTTCACCTGGTGTCCCGTCAATGGTGTCCAACGCATTGTTGTGATCGGGGGAAAGGGATTATTCAAAGTCAATACCAGACCAGATTCAGGGCATTTGCTATAATCGGGTGTCAAGTACAGACGTGATCgag

Function

GO:

id name namespace
GO:0002011 morphogenesis of an epithelial sheet biological_process
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process
GO:0090504 epiboly biological_process
GO:0001702 gastrulation with mouth forming second biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188905 lncRNA upstream 8692 13739776 ~ 13746116 (+) True G150106
TU188855 lncRNA upstream 104757 13649403 ~ 13650051 (+) True G150066
TU188827 lncRNA upstream 341744 13412865 ~ 13413064 (+) True G150042
TU188779 lncRNA upstream 786666 12966975 ~ 12968142 (+) False AMCG00000381
TU188614 lncRNA upstream 913135 12833539 ~ 12841673 (+) True G149869
TU189157 lncRNA downstream 705661 14464892 ~ 14465302 (+) True G150303
TU189234 lncRNA downstream 974001 14733232 ~ 14733440 (+) True G150364
TU189295 lncRNA downstream 1172547 14931778 ~ 14939473 (+) True AMCG00000443
TU189297 lncRNA downstream 1172547 14931778 ~ 14944400 (+) False AMCG00000443
TU189346 lncRNA downstream 1365479 15124710 ~ 15125951 (+) True G150455
AMCG00000394 mRNA upstream 15186 13731513 ~ 13739622 (+) True AMCG00000394
AMCG00000395 mRNA upstream 64410 13687967 ~ 13690398 (+) True AMCG00000395
AMCG00000388 mRNA upstream 74879 13667889 ~ 13679929 (+) True AMCG00000388
AMCG00000387 mRNA upstream 128052 13618488 ~ 13626756 (+) True AMCG00000387
AMCG00000386 mRNA upstream 137183 13608753 ~ 13617625 (+) True AMCG00000386
AMCG00000401 mRNA downstream 76 13759307 ~ 13759834 (+) True AMCG00000401
AMCG00000404 mRNA downstream 34027 13793258 ~ 13805747 (+) True AMCG00000404
AMCG00000403 mRNA downstream 53834 13813065 ~ 13837190 (+) True AMCG00000403
AMCG00000402 mRNA downstream 97407 13856638 ~ 13870201 (+) True AMCG00000402
AMCG00000392 mRNA downstream 122987 13882218 ~ 13909932 (+) True AMCG00000392
TU188861 other upstream 62219 13690839 ~ 13692589 (+) True G150069
TU188603 other upstream 1026905 12679670 ~ 12727903 (+) True G149859
TU188404 other upstream 1769093 11982460 ~ 11985715 (+) False AMCG00000352
TU188165 other upstream 3219671 10534590 ~ 10535137 (+) True G149525
TU188032 other upstream 3784007 9969324 ~ 9970801 (+) True G149424
TU189044 other downstream 373907 14133138 ~ 14153840 (+) True AMCG00000412
TU189714 other downstream 3176762 16935993 ~ 16938282 (+) True G150750
TU189794 other downstream 3786223 17545454 ~ 17548508 (+) True G150811
TU190029 other downstream 4394633 18153864 ~ 18159321 (+) True G150976
TU190161 other downstream 4657949 18417180 ~ 18419471 (+) False AMCG00000550

Expression Profile