RNA id: AMCG00000402


Basic Information

Item Value
RNA id AMCG00000402
length 4282
RNA type mRNA
GC content 0.54
exon number 6
gene id AMCG00000402
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 13856638 ~ 13870201 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGTGTCTTCTCTTTGTCCGAGTGTGCGATCGCATGGGCCTGGTTTGTCCCACCGGGTCCCTACTCTGCCAGCCGGCTCAGCGATGCGGGTGACAGGTGGTGCAGTAGGGTGGGCAGCATGGTTGTTAagttcctcttctctctctctttctctggcaGGTACAATGGCTCCCTCCCAAATGGAGACCGGGGCCGCAGGAAGAGCCGGTTTGCTTTGTACAGGAGAGCCAAGGCCAACGGGGTTAAGCCCAGCACTGTGCACGTGCTCAACACGCCACAGGCTAGCAAGGCGGTGAACTGCAGGGGGCAGCACAGTATCTCATACACGCTGTCCCGGAACCAGACCGTGGTGGTGGAGTATTGCCATGACAAGGACACGGACATGTTTCAGATTGGCCGCTCCACTGAGAGCCCCATTGACTTCGTGGTCACGGACACCGTGTCGGGGGGCCAGGCGGGTGAGGACGCGCCCATCACTCAGAGCACCATCTCTCGCTTCGCCTGCCGGGTGGTCTGCGAGCGCAGCCCCCCTTACACGGCCAGGATCTTCGCTGCCGGCTTCGACTCCTCCAAGAACATCTTCCTGGGGGAGAAGGCCGCAAAGTGGAAGAACCCTGACGGTCACATGGACGGGCTGACCACCAATGGTGTGCTGGTGATGCACCCACGGGGGGGCTTCACAGAAGACTCCAAGCCCGGTGTGTGGAGGGAGATCTCCGTCTGTGGGGACGTCTACACCCTGAGAGAGACCCGCTCCGCACAGACCCGAGGGAAACTGGTGGAGACTGAGAGCAACGTGCTGCAGGATGGCTCTCTGGTGGACCTGTGCGGCGCCACTCTGCTGTGGCGCACGGCGGACGGGCTGTTTCACACGCCCACGCAGAAGCACATCGAGGCACTACGGCAGGAGATCAACGCGGCACGGCCCCAGTGCCCCGTGGGGCTCAACACCCTGGCCTTTCCCAGCATGCAGCGCAGCCGTGACCTGGGCTCGCTGGAGGACAAGCAGCCCTGGGTCTACCTCACCTGCGGTCATGTGCACGGGTACCACAACTGGGGCCACCGCTCGGAGCACGAGCCCAACGCCCAGCGCGAGTGCCCCATGTGCCGCACGGTGGGGCCCTACGTGCCCCTGTGGCTGGGCTGCGAACCCGCCTTCTACGTGGACACCGGAGCCCCCACCCATGCCTTCGTGCCCTGCGGACACGTTTGCTCCGAGAAGTCGGCCAAGTACTGGTCTGAGATCCCCCTGCCCCACGGCACGCACGCCTTCCACGCCGCCTGCCCCTTCTGCGCCACGCAGCTCACCCCCTCCCAGGGCTGCGCCAAACTCATCTTCCAGGGACCCATTGACTGAGTTGACTCCTGGGGATCAGCCAGGGAGGGGGAGACGACgttttctcctgctcttcttttttgttttccttttttctgtttgttttttaattggcgGAGGGAGGGGTGTGTCGGCGTGGCCGCAGTTGATAAGGTGCTACTGAAATGCTCACCCTAGCAGGTCTGCTGGATGGCCGCATCTGCTGCCGAGAGCCGGGCGGACTCGGTCCAGACTGGCACTCGGGGGTGGTGAGGTTGTGGGAGCTCGGGCAGGTGGGCCGGGGCGAGCCTTTGGGTTTCTGCTCGGAGACTCCCTTGTCTACACTGTCATTTCCCTGCTGCCTCTTGTGTCCCATCAGCACCATATTTCACACTATTCTCTCACAGACCAGTCCAGGCATTTCACAAACCCGGTGGCACAGAAACCCCACTGAGCTGCTGAAGTAGCCGGGCTGAACTAGCTCCGAGGGACTGAATGACCGGAATGGACTCATCAGGCTTTCTGTAGCAATCCAGCCCTCGTTCACTCACTAAAGCCGGTCACTCAGATGGTGGAAGATGGCCACTCGTTTCCTCACTGTGCTGTGAGGGACCCCGGAGTGGGCTGGCATTGGCTGGCCGTGTCACAGAGTCGCAACGCTCGATTCCCGGGCCAGTCAGCTGGTCTGCTGGCTGGAGAGGAAAGgacagagaggaaggggaggcTGGGTCACTCGTCCACAACTCCTCACTCACCGTCATCCCCTGGGGGCCTCCCAACTCCCCCATCTCCTGCAACGGCCCTGCGGAGGGAGCGTGTGAAGCGGTGGAAGACGCTACGCCCTCTGAAACTCACTGCTGGAGATGCCAGTGAGCACGTGCGTGTGTGAGGGCGACCGAGGACCAGCGTAACTCCAGCCACTGCGACTAGGAAcgtcaaacaaataaatatgaatcatCTTCCATATAATACAGATATGGATTGCAATACTCAGGGGCCTGTACTGCCCCAGAGGGTAACATTTATACCAGATGAAATTGAGCTATTTTAATGAGGGGAGTTTATACGAAGAGAGagttgaacattttgttttcaagatgCATCAATAAAACTCATACGATCTGTCTTTCATATTCTTTCTAATGAGTATTTTACTACACTGAGGCCCTTGTacagttttataatttaaatgaggatgttaatatattttatcttgtatactcgtgtgtgtgtgtgtatgtgtgtatgtgtgtgtatgttggggGGGTAAACACTCTTCACGAGTCCGGTCCTCTGGATTTTTCGGTTTTCGTTCATTGTTCGTACCCTTAGACATCCACACTGATGTTTTGAGCACTATTTTCTCTCGCTCTACAGCTCGAGCGTTTTCGTTTCAAGTCGGTTTCCCCGTGGAGAGTCAAGACACCCTGACACACCGTTCGTGGATTTTAAGTATGAACCCGCACACACttcacacacgcacgcacagacTCTCGCACGCCTCTGACCCCTGCCGCTGGCGCTGGCGTTTCTGGGCCTCGattttacatgcagtgttttaaagCTTTCAACACCCCTGATATCTCGCGAGGGACAGAGTCAGACCTGCTGCAAGGGCTCGTGGGATATTTTGATTCTATCCCCGTGCTCCGGGAATTAAGACCACCCAGAGTCGCTCGGTTGGGCTGTTTTATGAGTTTCACCAGGGTCTGCTCAAATAGGTTGGTAGTTCTCCCggttttgctttttgttgttttaaacaatcTTGAGCTGGGCCAGATATACATGAGCAAGTGATGTGTGTTGGAGAGAAGACTGCAGTCCTGCATCTCGTATATGAACACTAACCCCTCCTGTGAGCAGCTCTTTGAATTGGTGGGCTCTCGCTGTAGTTTCCCCCTGTTTTACAGTAGTGACAGGTGCGATgtttgcaatattaaaaaaaggctaAAGCTATTCGATTAGGTAGCCgcatatattaattttatttctagaCTCTGTGGTCTTAATTACAGCAAAGAAGTAACTATTATTAAGACTTGGCAATGTGATCTTTACTCTGTTTATCCATACCACTTAAAATACGTGATTTGCTTGAATTAGCCGTATTCCAGTTGGTAAGTTCGCGTGGGAAGCAGTTTGTGACCGGGAAATAGGGAAGAGGAAAAGTGTAGCCTGTTTTTTCACCTTCGTGCCGCCATTCAAAGGATAATCACTGGAATTTGCGTCCTGTGTGGAAGGGAAGTGATATACGCAGACCCTGGGAGATGTTAttcattgaagaaaaataagaaaactcaaaattgCAGTTATTCTGTCCTCGGGAGCTTTGACTCTGTCCTCCTGGGATTTGGTTGATAGTGAAGTGTGTACTGAAAATGTGCAAATCAAAGGATTTCCTTCTTAACTGGCACTGTGAGGCGAGGTGGGCAAGAGATTCAGACCTGAAAGTTTGCCATTTAACGGCAAAACATTGCAGGGATCAAGATTAAAGAGAGGGGTATGAAATCTTAACCGCTTGGAGAACATAGATGATGGTTTAAATCCATAATGGCCATGTGCTGTGCTGGAGAGAGTTTGATTTCTAGTTACTACATGGTGAAGCTAATCGGAATGGTTGCACTGGTTAAAGTGGTCTTTTATAGGACTTCTCTTTTCTGGGCTGCTTCTGGGGTCTGCCACCTCCATCATGGTACGAGGGACCCCAGTACGATGCCCACTGAAGCAACTATAATCGAACATCTGACCTCTATGAGTTGAATTGAGTGGAGATGGCCGGCCTACGTGTGACTCGGAGCGGAGCTGGGCCGTCTCTGTCGGTCTTCCACTCGCACTGCTTCACTGTTTTACTCTAACATTCCTCACTGGGACACAACCAGCCCTGGGGGGGGACGGtggggctgctgctgttgaTGTTTTGTTCTTAACCTTTGTACGATCGGCGGGTGCCTGGACACCCCAAGAG

Function

GO: NA

KEGG:

id description
K11964 PELI; pellino

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188905 lncRNA upstream 110522 13739776 ~ 13746116 (+) True G150106
TU188855 lncRNA upstream 206587 13649403 ~ 13650051 (+) True G150066
TU188827 lncRNA upstream 443574 13412865 ~ 13413064 (+) True G150042
TU188779 lncRNA upstream 888496 12966975 ~ 12968142 (+) False AMCG00000381
TU188614 lncRNA upstream 1014965 12833539 ~ 12841673 (+) True G149869
TU189157 lncRNA downstream 594691 14464892 ~ 14465302 (+) True G150303
TU189234 lncRNA downstream 863031 14733232 ~ 14733440 (+) True G150364
TU189295 lncRNA downstream 1061577 14931778 ~ 14939473 (+) True AMCG00000443
TU189297 lncRNA downstream 1061577 14931778 ~ 14944400 (+) False AMCG00000443
TU189346 lncRNA downstream 1254509 15124710 ~ 15125951 (+) True G150455
AMCG00000403 mRNA upstream 19448 13813065 ~ 13837190 (+) True AMCG00000403
AMCG00000404 mRNA upstream 50891 13793258 ~ 13805747 (+) True AMCG00000404
AMCG00000401 mRNA upstream 96804 13759307 ~ 13759834 (+) True AMCG00000401
AMCG00000396 mRNA upstream 97407 13754808 ~ 13759231 (+) True AMCG00000396
AMCG00000394 mRNA upstream 117016 13731513 ~ 13739622 (+) True AMCG00000394
AMCG00000392 mRNA downstream 12017 13882218 ~ 13909932 (+) True AMCG00000392
AMCG00000407 mRNA downstream 158981 14029182 ~ 14033883 (+) True AMCG00000407
AMCG00000406 mRNA downstream 167443 14037644 ~ 14046770 (+) True AMCG00000406
AMCG00000410 mRNA downstream 226300 14096501 ~ 14103897 (+) True AMCG00000410
AMCG00000412 mRNA downstream 279685 14149886 ~ 14151172 (+) False AMCG00000412
TU188861 other upstream 164049 13690839 ~ 13692589 (+) True G150069
TU188603 other upstream 1128735 12679670 ~ 12727903 (+) True G149859
TU188404 other upstream 1870923 11982460 ~ 11985715 (+) False AMCG00000352
TU188165 other upstream 3321501 10534590 ~ 10535137 (+) True G149525
TU188032 other upstream 3885837 9969324 ~ 9970801 (+) True G149424
TU189044 other downstream 262937 14133138 ~ 14153840 (+) True AMCG00000412
TU189714 other downstream 3065792 16935993 ~ 16938282 (+) True G150750
TU189794 other downstream 3675253 17545454 ~ 17548508 (+) True G150811
TU190029 other downstream 4283663 18153864 ~ 18159321 (+) True G150976
TU190161 other downstream 4546979 18417180 ~ 18419471 (+) False AMCG00000550

Expression Profile