RNA id: AMCG00000407


Basic Information

Item Value
RNA id AMCG00000407
length 2875
RNA type mRNA
GC content 0.52
exon number 8
gene id AMCG00000407
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 14029182 ~ 14033883 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGAAAACAGGaagtgtttctgtattttgatCATTATTACTGAAGCCCAAGGACGGAATGTGCCTGTTTTGATGCTGCTTTTTTAAAACgatgatatttttatttacgTAAACGATTCGCGTCGAAGATTAAAACATATGtttgctgtagttttttttaagtgatttgaAATGATTACGTTTTACGCTTCTGTGAATGTTTAGTTTAGCTACAAATGTCGTATACTTATTTTTCATGGCGAAACTCTGTTCTTACTGTAATTGGAGTGCAATGGAAAACCGTCATATCTGATTGCAGTGATGTGCAATCTGTCTATTATAGCGAATGATATAATTCCCAATTCGGATTATACATCTGTCAGTCTGCCCACTAGTTGTGATTCAGGTTTAGCACTGAGATGGGTAACATGATGGTGCGAAGTTGTGTACATTGAATAAATCGTGTGGAAAGTGGGAGAAAATCAGAGTAACTCAGCTTCCCACACGGAGATAGTGATAGAGACAGCGGAGATGAGTATCCGAGCCCTGTGGGTCATCAGCCATGAGAAGGGCGAGTGTGGGACAGTGAGCTTCTCAAGGCGGTACCCGACGGTGGAGCGCCGTGCACGGGGGCTGGCAGGGAGGCGGTATGTGCCCATTCCTGAGGACAGCGATCTGCTGCGCCCACTTCTGACGGAGCTGGGAGTGACGGACCCAGAAAAGCCCTTTGTAACATCCCGGGATGACTGTGCCCGCCCCCAGCGCTCTCCAGCTCTGGAGGTGCACCTGGAGGGCCAGGATGGGGGAACTCTCTGGCCTCTGTTGGCCATCACTCAGGGGGAGCTGATCCTGGCTTGTCTGCCACTAGTAGAGGTCCCCCTGGAGCCTCAGCCCCCACTACCCAGCCTGCCCTCTGTGTCCCAGGGACTCTCCCTGCTGGCAGGGCTACAGACCTTCATATGTGGGGCTGGGGGAAGGGTGGAAGGGGATCTCCTGGCCTCACGTTTGGCCCTCCTACCAGCTGTGCTGCTGCAGACCTGCCCCCTCGGCACCCCCCTGGATACCCTCCAACTGGGGCTGCCGCCAGCCCCTTCCCCTGCTCCTGCAGGACCCCAAAAGCAACCCGCCTGGAAGCCAGGGGTGCACCGCGGGCGGGCAGTGGTCAATGTGGCCCTCAGTGAGCAGGTGCGCTCCATGCAGTATGGCAGCCGCACGAAGCAGGACCTCTGGGATGTCTTTGGTACGGTCACCTGCAAGTGTGAGTTGGAGGGGGTCTTGCCCAATGTGACTGTGACCCTCTGTCTGCCGCCCAACGGCTCCCCACTGCAGGACGTGCTGGTTCACCCCTGTGTGACCTCCCTGGACTCCAGTGTCCTGACTGCCAACAGCATAGACGACAGTGATGGCTCATCCTTCTCCGGTCCGTACAAGTTCCCCTTCTCCCCCCCTTTGGAGCCTTTCCGCCTCTGCAGTTACACGTCACAGGTACCTGTGCCTCCCATACTGGGGTCCTATCagctgaaggaggaggagagccagTTAAAACTGACCGTCAGCCTGAAGCTGCATGAGAGCGTCAGGAACAGCTTTGAGTACTGCGAGGCACACCTGCCCTTCTTCAACAGGGGACCGCTGAACATTGTGGACGTGCGGGTGAGTGCGGGACAGCTGGAGGTCTCCCGAGAGAAGAGCCTTTTGGTCTGGGTGCTGGGTCAGAAGTTCCCCAAGTCTTTGGAGGCTACACTAGGGGGCACTGTGGCTTTCTCTGGGCAATCCCCAGGGCCAGTTGACCCTCTTTGCACAGGGCTGACTGCCTACATCAAGCTGTACTTCCGAGTCCCTGACCTAACTCTGTCTGGATGCTCTGTGGACCAACACTCGGTGCAAGTGTACTCCTCCGCCAAGCCACGCATCACCACCTCCCGTGAGCTTTTGTCCTCCGAGTATTTCATCTGGAACTCCACAGGGGATGCTCCCGTTTCTTCTGGACTTATGATGCTGTAACGCAGAAGTGGGTAAGCACAGGAAAGGCCGGGGCGGGGACGAGAGAGCGCCGCCCTGGAGGGGCGACCTTGGAGGGAAAAGGGGAGCCGAATCTCCTCACGGGTTGGCTGTAGACATCTCCGTCTCTGTATGTGCTGGCAACCTCCTACAGTGGGCCGATTCGCCGATTCTGAGCAGACTCCGTGTGGCCATCACAGGGCCTGGACCTGAGGCACGCTTGAATACACAGTGGGGAGACAAAAACTTCCTCAAGAAGACCAGCCTTCCCAGGGACTGGTTGGGCATTTTTTCAGTTACAGGGTTTCAATTGATCCGGTTATCTCTAATACAGCTCGATTGAAACGGTGAAATgttctggtgtgtgtgtcttggtTTCCTGCTTCACCCTGACTGTTACATGTTGATGACTCTGAAACATAAACACTGTGCTCTTCACAGCACTGCCGATGGTTTACACCTGGACTGTCACTGGCTTACTCTACAAGAAGGATAGTCTTACCATTATCCCAAAGACTGATCTCAGGGAGCCAGGAAAGAAAGTGTTTGCACTATAGTATTACTCCAATCTGTCCAGGATATGAGGCATGGGTTGAAATTGTGAAATTCAGTTCAATACGGTATGCTGCCATTAAAAAAACTCacaataaacttaaaatacaattttttatttttctgttggaaCACTTGTCTGTTTTCATGTCCTTGACTAAGAGAGATTGAGAACAGATCTTATTCACCCAAGCCTTTAGCCTCTATATTtctcattaaatattgaaaatgtttttaccCACGTaagaagtataaaaaaaaatgtcaaaaccttttctctctttcttttttcctcctttcGTTCTTTCTGAGAATTCCTTTTAGCCGCTGACATGGCAATAAAG

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0030131 clathrin adaptor complex cellular_component

KEGG:

id description
K19023 AP5M1, MUDENG; AP-5 complex subunit mu-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188905 lncRNA upstream 283066 13739776 ~ 13746116 (+) True G150106
TU188855 lncRNA upstream 379131 13649403 ~ 13650051 (+) True G150066
TU188827 lncRNA upstream 616118 13412865 ~ 13413064 (+) True G150042
TU188779 lncRNA upstream 1061040 12966975 ~ 12968142 (+) False AMCG00000381
TU188614 lncRNA upstream 1187509 12833539 ~ 12841673 (+) True G149869
TU189157 lncRNA downstream 431009 14464892 ~ 14465302 (+) True G150303
TU189234 lncRNA downstream 699349 14733232 ~ 14733440 (+) True G150364
TU189295 lncRNA downstream 897895 14931778 ~ 14939473 (+) True AMCG00000443
TU189297 lncRNA downstream 897895 14931778 ~ 14944400 (+) False AMCG00000443
TU189346 lncRNA downstream 1090827 15124710 ~ 15125951 (+) True G150455
AMCG00000392 mRNA upstream 119250 13882218 ~ 13909932 (+) True AMCG00000392
AMCG00000402 mRNA upstream 158981 13856638 ~ 13870201 (+) True AMCG00000402
AMCG00000403 mRNA upstream 191992 13813065 ~ 13837190 (+) True AMCG00000403
AMCG00000404 mRNA upstream 223435 13793258 ~ 13805747 (+) True AMCG00000404
AMCG00000401 mRNA upstream 269348 13759307 ~ 13759834 (+) True AMCG00000401
AMCG00000406 mRNA downstream 3761 14037644 ~ 14046770 (+) True AMCG00000406
AMCG00000410 mRNA downstream 62618 14096501 ~ 14103897 (+) True AMCG00000410
AMCG00000412 mRNA downstream 116003 14149886 ~ 14151172 (+) False AMCG00000412
AMCG00000411 mRNA downstream 123153 14157036 ~ 14159090 (+) True AMCG00000411
AMCG00000422 mRNA downstream 146953 14180836 ~ 14204787 (+) True AMCG00000422
TU188861 other upstream 336593 13690839 ~ 13692589 (+) True G150069
TU188603 other upstream 1301279 12679670 ~ 12727903 (+) True G149859
TU188404 other upstream 2043467 11982460 ~ 11985715 (+) False AMCG00000352
TU188165 other upstream 3494045 10534590 ~ 10535137 (+) True G149525
TU188032 other upstream 4058381 9969324 ~ 9970801 (+) True G149424
TU189044 other downstream 99255 14133138 ~ 14153840 (+) True AMCG00000412
TU189714 other downstream 2902110 16935993 ~ 16938282 (+) True G150750
TU189794 other downstream 3511571 17545454 ~ 17548508 (+) True G150811
TU190029 other downstream 4119981 18153864 ~ 18159321 (+) True G150976
TU190161 other downstream 4383297 18417180 ~ 18419471 (+) False AMCG00000550

Expression Profile