RNA id: AMCG00000410



Basic Information


Item Value
RNA id AMCG00000410
length 2454
RNA type mRNA
GC content 0.48
exon number 13
gene id AMCG00000410
representative True

Chromosome Information


Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 14096501 ~ 14103897 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TTTTGATTCAGGCGAATTATTTAGTGGCCCGAAATCTGCcattgctgtgctgtgtttgaaGAAGCCCCTCCGCCCTACCCAGCTGTGTAGCAGCGCAGTATAAACATCTAGCTTTAGATTAGTGATTTCTGATATATTGTCCTTTgtgaaataaaccaaaatgCCGCTGTTTGAGGGCCTGGGGAGCGGCGGAGAGAAGACAGCTGTCGTCGTTGATTTAGGAGCAGCCTACACGAAGTGTGGCTTTGCTGGTGAAACTGGGCCGAGATGCATCATTCCAAGTGAGATCCAACGACCGGGTCTTCCACAGCCAATCAAGGTGGTTCAGTACAACATCAACACGGAGGAGCTCTACTCCAACCTTAAGGAATTCATTCACATGCTGTATTTCAGGCATCTGCTTGTGAATCCCCGGGATCGGCGTGTTGTGATCATCGAGTCGATTCTCTGCCCCTCGCACTTCAGAGAGACTCTTTCTAGAGTCTTCTTCAAACACTTTGAGGTGCCGTCGGTGCTCTTCGCTCCGAGCCACCTCATGTCTCTGTTGACCTTGGGCATCAACTCGGCCCTGGTGATGGACTGCGGCTACACGGAGACGCTAGTGCTGCCTGTGTATGAGGGCATCCCCATCCTGTCATCCTGGGAGGCCCTGCCGCTGGGAGGGAAGGCCATTCACAAGGAGCTGGAGAGCTTGCTGGTGGAGCAGTGCACTGTGGACACCGACTCCAGCACAGGCCAGAGCTTGCCAGCGGTCATGGGTTCCATTCCAGAAGAAATCACAGAAGATATTAAAGTGCGGACCTGTTTCGTTAGTGACCTGCAGAGAGGGCTGAAGATCCAGGAGGCCAAGTTCAACCTGGATGGCACAGCTGAGCGCCCTGCCCCACCTCCTGATGTTGACTATCCATTGGATGGAGCAAAGATTTTGCATATCAAGGGACCGATCAGGGATTCTGTGATTGAGATGCTGTTTGAGCAGGACAACGAGGAGAAGTCTGTCGCCACCTTGGTGCTGGACGCGCTGGTCAAGTGTCCGATTGACACGCGCAAGGCGCTCTCCGAGAACCTGGTCATCATTGGCGGCACCGCCATGCTGCCTGGCTTCCTGCACCGCCTCCTGGCAGAGATACGGCTGCTGGTGGAGAAGCCGCGGTACAAGCGGGCGCTGTCCACCAAGACCTTCCGCCTGCACAGCCCCCCGGCCAAGCCCAACTGCACAGCCTGGCTCGGAGGTGCCATATTTGGGGCTCTGCAGGACATCCTCGGCAGCCGCTCGGTGTCTCGGGATTACTACAACCAGATGGGTCGCATTCCTGACTGGTGCTCGCTGAGCAGCCCTCCCCCAGAGGCTGTGTACGATGCAGGCAAGACCCCCCCACCACTGATGAAGAGGGCCTTCTCCACAGAGAAGTGAACCCCTGTCCCTCTGCCCCTGGGTCCACCTCCTCCACCGTCCCCGCTTGCCTAAAAGGTCCAGGAGCTGGTGGGTCTGAAGGAGTGAGTTTGACTCAACGTGCTTTTCATTCCCAGCAGCTGCCCACCGATGCCCGTTGGACTGATGTGACATCACAATATGGGTGCCGCCTCCCCTCCTGTCACTGCAGTCCTGTTTCACTCAGCTGTACTAGCACTGTAATTTATTCTGGCCAGTTGTTGTGTTATCCACATGGGGACGGGTATTACACTACAATTCGGTGCCGTTTAACCCGCTTGTTTGTGCAATCAGCAGCGTCTGGACTAATGCCGGCTAATCTGTCGGGTCAAACCTGGCTGGTCACCTTGTACAATTATAATCTGCTGAAATAATAAACCTGCCATTGTTTGTGCCGTGCGTATGATTTTCTTCATCTATGACTCAGATCAAGATGTGCTTGTTACGTAGCGTTATTTTCATTCAGTTACTGGAAGTCATATGCAGCACGccattagaaaaaacaaaaacgtacagaacttatgttttcaattatatattgtaagaGTATGAAGAAGGTTCGTTGATCCTGAGCccctttcaaaaaataaatcatggtaGTTATGTACAGAAAAACTACATGGTAattttattcatattgtttttattttatttcactttgtgTGACTGACTCGAGCCATTTGCTTTCAATAgttagtgtattttatttaggcAGTATTCTTAAGGAATGATGTtataaatattctgaaataaatgtttatcacTGCTTCTTGTTGATTTTAAGTTATTATAATTGTACTAaggacattacattttttgaaaaccAGTATACATGCAATGAGCAAGAAAGAGATGCATATTTTTCCAcgtttgttttgaatttaataccttgttttttgtttatccttcgtaatacattattttatttgtatttgttttcctcctgtaACAAATACTATGAAATGGAATCGAATccaaggagggaaaaaaaaatcccagcaAAAGATTGCAAACTATATTTG

Function


GO: NA

KEGG:

id description
K16576 ACTR10, ARP11; actin-related protein 10

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU188905 lncRNA upstream 350385 13739776 ~ 13746116 (+) True G150106
TU188855 lncRNA upstream 446450 13649403 ~ 13650051 (+) True G150066
TU188827 lncRNA upstream 683437 13412865 ~ 13413064 (+) True G150042
TU188779 lncRNA upstream 1128359 12966975 ~ 12968142 (+) False AMCG00000381
TU188614 lncRNA upstream 1254828 12833539 ~ 12841673 (+) True G149869
TU189157 lncRNA downstream 360995 14464892 ~ 14465302 (+) True G150303
TU189234 lncRNA downstream 629335 14733232 ~ 14733440 (+) True G150364
TU189295 lncRNA downstream 827881 14931778 ~ 14939473 (+) True AMCG00000443
TU189297 lncRNA downstream 827881 14931778 ~ 14944400 (+) False AMCG00000443
TU189346 lncRNA downstream 1020813 15124710 ~ 15125951 (+) True G150455
AMCG00000406 mRNA upstream 49731 14037644 ~ 14046770 (+) True AMCG00000406
AMCG00000407 mRNA upstream 62618 14029182 ~ 14033883 (+) True AMCG00000407
AMCG00000392 mRNA upstream 186569 13882218 ~ 13909932 (+) True AMCG00000392
AMCG00000402 mRNA upstream 226300 13856638 ~ 13870201 (+) True AMCG00000402
AMCG00000403 mRNA upstream 259311 13813065 ~ 13837190 (+) True AMCG00000403
AMCG00000412 mRNA downstream 45989 14149886 ~ 14151172 (+) False AMCG00000412
AMCG00000411 mRNA downstream 53139 14157036 ~ 14159090 (+) True AMCG00000411
AMCG00000422 mRNA downstream 76939 14180836 ~ 14204787 (+) True AMCG00000422
AMCG00000424 mRNA downstream 120267 14224164 ~ 14228809 (+) True AMCG00000424
AMCG00000423 mRNA downstream 131343 14235240 ~ 14245576 (+) True AMCG00000423
TU188861 other upstream 403912 13690839 ~ 13692589 (+) True G150069
TU188603 other upstream 1368598 12679670 ~ 12727903 (+) True G149859
TU188404 other upstream 2110786 11982460 ~ 11985715 (+) False AMCG00000352
TU188165 other upstream 3561364 10534590 ~ 10535137 (+) True G149525
TU188032 other upstream 4125700 9969324 ~ 9970801 (+) True G149424
TU189044 other downstream 29241 14133138 ~ 14153840 (+) True AMCG00000412
TU189714 other downstream 2832096 16935993 ~ 16938282 (+) True G150750
TU189794 other downstream 3441557 17545454 ~ 17548508 (+) True G150811
TU190029 other downstream 4049967 18153864 ~ 18159321 (+) True G150976
TU190161 other downstream 4313283 18417180 ~ 18419471 (+) False AMCG00000550

Expression Profile