RNA id: AMCG00000411



Basic Information


Item Value
RNA id AMCG00000411
length 1227
RNA type mRNA
GC content 0.59
exon number 3
gene id AMCG00000411
representative True

Chromosome Information


Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 14157036 ~ 14159090 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGAGCAGTAAAAGTAAATCAGAGAGCCGCAGGAGGCTGTCAGCGGGGCTGCGTGCCGAGATGATGAACAAGCTGAGAAGCCTGCAGCCGGGCAGAGCCAGGAACGAGTCTGAGAGAGACTCGGGTTTCTCAGATGTTAGTTCTGAGTATCTGAGTGCGGTGGATCAGACTGATTCTGAGGATGCACCAAAAACACCGGGCCAGAACCGCAGCTCCAGGCCTCAGCCGCCACAGATGGCGGTGCTGGGAGGGTCTTATCCGGGACTGTCGCCCATGATCATCATGAACAAAATCCTGCTGAAACAGtcAGGTCATGCCTCTCCTCCAGTGAAGCCATGGGGCTTCCATCAGGGGCTTGAAGTGATTCCTCCACCCCAGGTTGTGTTTCTTCAGCCCGTCATCTCGAACAGCAATGCCACCCCCCCGAAAAGTCCCCAGGACAAGAGGCGGCGATCCGAGAAGTACCTGCCCATCCTGAAATCCTACCCCAAAATAGCTCCACACCCGGGGGACGGCTCCTCGGAAAACAGTGGCTCGAGCTCCTCAGGGGTGAGCAGTGTGTCCTCTGCTCGTGAGGGCCGGGTCAGCGTGCTCCGGCACCGGCGGCACAGCAGGGACAAACGGCAGAGTCGCCCGATCTGGTCAGCCAGTCCGGCGCTGTCCAGCCTCCCCCCCACGCCAAGCTCCCAGTCCAGCCCTCGGGAGGAATCGTCTACCCTCACTGGTAGTTTGTCCACCAAGATGGAGGACACTCCTTTGAGTGGCCAGCCAGCCCAAACTAAAGTGTCCCAGGAGTCGGCCTTGTCCCTGCAATCACCCAGAATGCTGTTTCCTTCCCCTGAGTCCGAGACCGCCTCCCTGCCCTCCCAGGCATGCCCGACCCCCGACCCCTCCATGTCCGAGAGCGAGGGGGAGGGCTCCCACTGCTCCCTGTCTGACAACCGGAACAAGAGGAAGCGCTTTTGTAACACCTACAACATCCTGCACAAGTCCGGCCTCCTGGGGATCACGCTACGGACCAAGGATCTGATCCGTCAGAACCGCAAAACCcagctggagctggagcgcCTGAAAGAGCAGACCTGCCTCTTTGTGCAGGCGGTGAACAGCGGAGACCCCCAGGTCTGGACTAAGCTGCAGCTTGCCATGCTGCAAGCCAACCCCACTGCTGAAGAGAACGGAGAGAAAGTGACTCAAAAAAGGGGACTGGAGGATGAAGACGAGTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU188905 lncRNA upstream 410920 13739776 ~ 13746116 (+) True G150106
TU188855 lncRNA upstream 506985 13649403 ~ 13650051 (+) True G150066
TU188827 lncRNA upstream 743972 13412865 ~ 13413064 (+) True G150042
TU188779 lncRNA upstream 1188894 12966975 ~ 12968142 (+) False AMCG00000381
TU188614 lncRNA upstream 1315363 12833539 ~ 12841673 (+) True G149869
TU189157 lncRNA downstream 305802 14464892 ~ 14465302 (+) True G150303
TU189234 lncRNA downstream 574142 14733232 ~ 14733440 (+) True G150364
TU189295 lncRNA downstream 772688 14931778 ~ 14939473 (+) True AMCG00000443
TU189297 lncRNA downstream 772688 14931778 ~ 14944400 (+) False AMCG00000443
TU189346 lncRNA downstream 965620 15124710 ~ 15125951 (+) True G150455
AMCG00000412 mRNA upstream 5864 14149886 ~ 14151172 (+) False AMCG00000412
AMCG00000410 mRNA upstream 53139 14096501 ~ 14103897 (+) True AMCG00000410
AMCG00000406 mRNA upstream 110266 14037644 ~ 14046770 (+) True AMCG00000406
AMCG00000407 mRNA upstream 123153 14029182 ~ 14033883 (+) True AMCG00000407
AMCG00000392 mRNA upstream 247104 13882218 ~ 13909932 (+) True AMCG00000392
AMCG00000422 mRNA downstream 21746 14180836 ~ 14204787 (+) True AMCG00000422
AMCG00000424 mRNA downstream 65074 14224164 ~ 14228809 (+) True AMCG00000424
AMCG00000423 mRNA downstream 76150 14235240 ~ 14245576 (+) True AMCG00000423
AMCG00000421 mRNA downstream 102319 14261409 ~ 14282672 (+) True AMCG00000421
AMCG00000417 mRNA downstream 126926 14286016 ~ 14288319 (+) True AMCG00000417
TU189044 other upstream 3196 14133138 ~ 14153840 (+) True AMCG00000412
TU188861 other upstream 464447 13690839 ~ 13692589 (+) True G150069
TU188603 other upstream 1429133 12679670 ~ 12727903 (+) True G149859
TU188404 other upstream 2171321 11982460 ~ 11985715 (+) False AMCG00000352
TU188165 other upstream 3621899 10534590 ~ 10535137 (+) True G149525
TU189714 other downstream 2776903 16935993 ~ 16938282 (+) True G150750
TU189794 other downstream 3386364 17545454 ~ 17548508 (+) True G150811
TU190029 other downstream 3994774 18153864 ~ 18159321 (+) True G150976
TU190161 other downstream 4258090 18417180 ~ 18419471 (+) False AMCG00000550
TU190212 other downstream 4383287 18542377 ~ 18565627 (+) True AMCG00000572

Expression Profile