RNA id: AMCG00000416


Basic Information

Item Value
RNA id AMCG00000416
length 3613
RNA type mRNA
GC content 0.56
exon number 19
gene id AMCG00000416
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 14316161 ~ 14340047 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACAGGGAAAGAAGGGGCAGTGTTGTCGGAAAgtttaaacaaatctaaaacCGCATCGCCCGCTGAGCATGTGGGGACAAACAACCACCAGCCATCCAAGACTAATGCCACCAACCCCCCCAGGTGCACCGGGTTCGGGATTCAGGAGATTTTGGGGCTCAATAAAGACCCGCCCTCGGTTCCCCGGACCGCACTGGACTCCCTGCCGCCCGGGGCGCACCTGCTGGCGGCCAGGTCTGTGCTCGGCCCCGCCGGTGTTGGGGTGGGAATGGGATTAATGGGCGCTGGAGGAATCCCCTCCTTTTACAGCCAGCCTGCGTTTCTGGAGGTGCTGTCAGATGCGCAAAATGTCCACCTGCAGCCCCTGAGCAGGACAGTGGGACACCTGGACACAAGCCAGACTGCCAGCTCAGATTCTGAAGATGTATCTTCCAGTGAGAGGAAATTATCAAAATCGTCTCTGAGCCAgagcaagaaaagaaagaagagacgACACCGAACCATCTTTACCTCTTACCAGCTGGAGGAGTTGGAGAAAGCCTTCAACGAAGCGCACTACCCAGACGTGTACGCCAGGGAGATGCTGGCCATGAAGACAGAGCTCCCCGAGGACAGAATACAGGTGTGGTTCCAGAACCGGCGGGCCAAGTGGAGGAAGCGGGAGAAGTGCTGGGGCCGCAGCAGCGTGATGGCGGAGTACGGCCTGTACGGCGCCATGGTGCGCCACTCCATCCCCCTGCCCGAGTCCATCCTCAAATCGGCCAAGGACGGCATCATGGACTCCTGCGCCCCCTGGCTCCTCGGGATGCACAAAAAGTCATTGGAGGCCGCGGTGACCCCGACGACAGGCAAGCCTGAGGCCGTGCCGCAGCCCGCCATTCAGAAACAGGACGAGCGGGAGGCGGAGGAGAGGAGCAAAGAGTCCCGGTCACCGATTTCCAAAGAGGAACTGAGGGAGAACAGCATCGCAGCACTCAGGGCAAAAGCACAGGAGCACAGTGCGAAAGTGCTGGGGACTGTTTCAAGTGAGGGACCGGGGCGCAAGATGGAGACGGAGGAGGCCGAGGAGAAAAGCAGAGATCAATTGGCGTCGCTGAAGGCACGTCTCTGCGGGAGATTGCCTCTGGCTTGTCGGACACATTTGGGGACTCGCAGCTCTGATCCCCGGGGCAGGAGTTACAATGTAGCCGCCTGGATGCCCGAGGCGGCGGCGTTTGACGGGGTTGGGGACCACAGGGCTCTGTACGACTTCTCCGTGCAGCAGGGGGGCCGGTTCTGGGGGGCTCTGGGCAGACAGCGGCTGTCCTGGATCAGCCCCTTCCACACGGTGCAGGACTGTGACCTGAGCCGGGGCAGGATCAGGTGGTTTGAAGGTGGACAGCTGAACACATCAGTAAACTGCCTGGATCGCCACGTCCACACGTGTCCCGACAAGGTTGCCCTGATCTGGGAGAGGGACGAACCGGGCACCGAAGTCCGAATCACATACAGGCAGTTGTTGGAGTTGACATGTCGGCTGGGAAACGTCCTGAAGAGGCAAGGTGTACAAAGGGGCGACTGTGTGACTCTCTACATGCCTTCCTGCCCCCTGGCTGTAGCGGCCATGCTTGCTTGTGCCCGAATCGGCGCCGTCCACAATGTGGTGTTTGCTGGATTCAGCGCCGAGGCGTTGGCTGACCGAATAAAAGATGCTCAGTCCAGCATCGTGATCACTATGAACCAGGGCCTGCGGGCGGGCAGGGTGATCGAGCTGAAGAAGACCGTGGATCAGGCCATCCAGAGCTGCCCCGACGTCCGACTGGTGCTCGTGGCCATGAGGACAGAGAATCTGGTTGCGATGACGGATAAAGATGTGCCACTGGAGGAGgaaatgaaaaaggaGGATGTGAATTGTGAGCCAGTGGCCATGGAGAGTGAGGACAGGCTGTTTGTGCTGTACAGCTCGGGCAGCACTGGCAAGCCCAAGGGCCTGGTCCACTCACAGGCCGGCTACCTGCTGTACTCTGCCCTCACTCACAGGTATGTGTTTAACTATCACGACGGGGACGTGTTTGGCTGTGTTGCCGATATCGGCTGGATCACAGGACACAGCTACGTGGTTTATGGCCCACTGTGCAACGGAGGAACCACTGTCCTGTTTGAAAGCACTCCAGTATATCCCAACCCAGGCAGATACTGGGAAACAGTGGAGAGGTTAAGAATCAATCAGTTTTATGGAGCTCCGACAGCAATTCGCCTTCTGCTAAAATACGGGGATCAGTGGGTGGAAAAATACGACAGATCATCTCTTAAAACCCTGGGCTCTGTGGGAGAGCCAATCAACTCGGAGGCCTGGCAGTGGTACTTCAGAGTGGTGGGTGATGGGAGATGCCCTGTGGTGGACACCTGGTGGCAGACAGAGACCGGCGGGATTTGCATCGCTCCCAGACCGTCCGACCCCGAGGCAGAGATAATCCCCGCCATGGCGATGCGGCCCTTCTTTGGGATCCGGCCGGCGCTAATGGACAGCAAGGGGAATAGGCTGTCTGCTAATGACACCTCGGGCGCTCTCTGCATCGCTCAGGCCTGGCCTGGCATGGCAAGAACCATTTACAATGACCACCAGAGGTTCGTAGAGACCTACAGCCAGCCTTACCCAGGTTACTTTTTTACTGGTGACGGTGCTTACCGCTCTAAGGAAGGCTACTACCAGATTCTTGGGCGGCTTGATGATGTCATCAATGTCAGCGGACACCGCCTGGGGACGGCGGAGGTAGAAGATGTGGTGaatcaGTGTCATGGTGTCGCCGAGTCTGCCGTTATTGGCTATTCCCATGATATCAAAGGACAAGGTGTCTACGTCTTTGTTGTGCTGAAGGAGCAAGATGCTTTACCTGAGGAACTCCTGGCCCAACAGCTGAGGGACCGGGTCTCCAAGAGGATTGCAAAATTTGCTGCCCCTGACTACATCCAGGTGGTCAAGCGGCTGCCCAAGACGCGGTCCGGGAAGATCATGCGCCGTGTGCTGAGGAAGATCGTGGACAGGAAGGCCGATGAGCTGGGGGACCTCACCACGCTGGACGACCACACGACGGTGCAGGAAATCATCCAGGGGCACAGGCACCTGCAGGAGCGAGACCAACGACGATAACGGCAAGGAGAGAAGGGTCCCTGTCCCAGTGCTGCAGTTGAGGTGGGGGGGATGAGAGCTAAGCTTGAGTCGAGAGCAGTAGGGTACAGAACGTGGCAAGCAGATTGCTTTTGTAAAGGCTGGTTTATTCAGGCAACGCTTCAGCCGACGCTGTGTGTACACAGTGCAGCAGAGGAACTGTGCAAATATCTGTCGCCGTTTTTAAGGAAATCATTTCAAACgcataaacaaacaagtatACAAAAGCTAATTGAAAGCTGTAGAATGCACTTAGCTGTGAAAATGGATCCGTCTCTCTGAAGGTGTAAACCCGGAGGAGAATTAGGAAACAGGCCGCAGGGTAGCACTGCATGGTTTGGATCCACAATTaagaatgcattaaaaacaaattacctaCTGCTGGTATAACTGAGCAATAACTCAATAAGGGCTGAGACGCTCTGTTAACTGTACATTAAAATGCGAAATTTTAAATGGAAGA

Function

GO:

id name namespace
GO:0019427 acetyl-CoA biosynthetic process from acetate biological_process
GO:0003987 acetate-CoA ligase activity molecular_function
GO:0016208 AMP binding molecular_function

KEGG:

id description
K01895 ACSS1_2, acs; acetyl-CoA synthetase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188905 lncRNA upstream 570045 13739776 ~ 13746116 (+) True G150106
TU188855 lncRNA upstream 666110 13649403 ~ 13650051 (+) True G150066
TU188827 lncRNA upstream 903097 13412865 ~ 13413064 (+) True G150042
TU188779 lncRNA upstream 1348019 12966975 ~ 12968142 (+) False AMCG00000381
TU188614 lncRNA upstream 1474488 12833539 ~ 12841673 (+) True G149869
TU189157 lncRNA downstream 124845 14464892 ~ 14465302 (+) True G150303
TU189234 lncRNA downstream 393185 14733232 ~ 14733440 (+) True G150364
TU189295 lncRNA downstream 591731 14931778 ~ 14939473 (+) True AMCG00000443
TU189297 lncRNA downstream 591731 14931778 ~ 14944400 (+) False AMCG00000443
TU189346 lncRNA downstream 784663 15124710 ~ 15125951 (+) True G150455
AMCG00000417 mRNA upstream 27842 14286016 ~ 14288319 (+) True AMCG00000417
AMCG00000421 mRNA upstream 33489 14261409 ~ 14282672 (+) True AMCG00000421
AMCG00000423 mRNA upstream 70585 14235240 ~ 14245576 (+) True AMCG00000423
AMCG00000424 mRNA upstream 87352 14224164 ~ 14228809 (+) True AMCG00000424
AMCG00000422 mRNA upstream 111374 14180836 ~ 14204787 (+) True AMCG00000422
AMCG00000420 mRNA downstream 1453 14341500 ~ 14342163 (+) True AMCG00000420
AMCG00000419 mRNA downstream 15844 14355891 ~ 14357921 (+) True AMCG00000419
AMCG00000433 mRNA downstream 202210 14542257 ~ 14545457 (+) True AMCG00000433
AMCG00000431 mRNA downstream 208615 14548662 ~ 14567052 (+) True AMCG00000431
AMCG00000432 mRNA downstream 227284 14567331 ~ 14572246 (+) True AMCG00000432
TU189044 other upstream 162321 14133138 ~ 14153840 (+) True AMCG00000412
TU188861 other upstream 623572 13690839 ~ 13692589 (+) True G150069
TU188603 other upstream 1588258 12679670 ~ 12727903 (+) True G149859
TU188404 other upstream 2330446 11982460 ~ 11985715 (+) False AMCG00000352
TU188165 other upstream 3781024 10534590 ~ 10535137 (+) True G149525
TU189714 other downstream 2595946 16935993 ~ 16938282 (+) True G150750
TU189794 other downstream 3205407 17545454 ~ 17548508 (+) True G150811
TU190029 other downstream 3813817 18153864 ~ 18159321 (+) True G150976
TU190161 other downstream 4077133 18417180 ~ 18419471 (+) False AMCG00000550
TU190212 other downstream 4202330 18542377 ~ 18565627 (+) True AMCG00000572

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00024065 True 1720 mRNA 0.47 5 NC_007128.7 31652640 ~ 31659670 (-)
grasscarp (Ctenopharyngodon idella) CI01000189_03517928_03524647.mRNA True 1901 mRNA 0.45 5 CI01000189 3517283 ~ 3524712 (-)