RNA id: AMCG00000417


Basic Information

Item Value
RNA id AMCG00000417
length 282
RNA type mRNA
GC content 0.49
exon number 5
gene id AMCG00000417
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 14286016 ~ 14288319 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGTCTCCCAGTGGAGGTGATGACTTCGAAAACTCTCTTATGAGTTTAGAGAAATTAGACCGAGCCTCTCCAGATCTGTGGCCGGAGCAACTCCCTGGGGTTGCAGAATTCGCAGCCTCCTTTAAAAGTCCGATCACAAATTCCCCACCAAAGTGGATGGCCGAACTCGAAAACGATGACATTGAGATGTTAAAAGAGTTGGGAAGTTTGACCACAGCCAACCTGATGGAGAAAGTGAAGGGACTGCAAAACCTGGCCTACCAGCTTGGGCTAGAAGAA

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0007049 cell cycle biological_process
GO:0070176 DRM complex cellular_component

KEGG:

id description
K21775 LIN52; protein lin-52

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188905 lncRNA upstream 539900 13739776 ~ 13746116 (+) True G150106
TU188855 lncRNA upstream 635965 13649403 ~ 13650051 (+) True G150066
TU188827 lncRNA upstream 872952 13412865 ~ 13413064 (+) True G150042
TU188779 lncRNA upstream 1317874 12966975 ~ 12968142 (+) False AMCG00000381
TU188614 lncRNA upstream 1444343 12833539 ~ 12841673 (+) True G149869
TU189157 lncRNA downstream 176573 14464892 ~ 14465302 (+) True G150303
TU189234 lncRNA downstream 444913 14733232 ~ 14733440 (+) True G150364
TU189295 lncRNA downstream 643459 14931778 ~ 14939473 (+) True AMCG00000443
TU189297 lncRNA downstream 643459 14931778 ~ 14944400 (+) False AMCG00000443
TU189346 lncRNA downstream 836391 15124710 ~ 15125951 (+) True G150455
AMCG00000421 mRNA upstream 3344 14261409 ~ 14282672 (+) True AMCG00000421
AMCG00000423 mRNA upstream 40440 14235240 ~ 14245576 (+) True AMCG00000423
AMCG00000424 mRNA upstream 57207 14224164 ~ 14228809 (+) True AMCG00000424
AMCG00000422 mRNA upstream 81229 14180836 ~ 14204787 (+) True AMCG00000422
AMCG00000411 mRNA upstream 126926 14157036 ~ 14159090 (+) True AMCG00000411
AMCG00000416 mRNA downstream 27842 14316161 ~ 14340047 (+) True AMCG00000416
AMCG00000420 mRNA downstream 53181 14341500 ~ 14342163 (+) True AMCG00000420
AMCG00000419 mRNA downstream 67572 14355891 ~ 14357921 (+) True AMCG00000419
AMCG00000433 mRNA downstream 253938 14542257 ~ 14545457 (+) True AMCG00000433
AMCG00000431 mRNA downstream 260343 14548662 ~ 14567052 (+) True AMCG00000431
TU189044 other upstream 132176 14133138 ~ 14153840 (+) True AMCG00000412
TU188861 other upstream 593427 13690839 ~ 13692589 (+) True G150069
TU188603 other upstream 1558113 12679670 ~ 12727903 (+) True G149859
TU188404 other upstream 2300301 11982460 ~ 11985715 (+) False AMCG00000352
TU188165 other upstream 3750879 10534590 ~ 10535137 (+) True G149525
TU189714 other downstream 2647674 16935993 ~ 16938282 (+) True G150750
TU189794 other downstream 3257135 17545454 ~ 17548508 (+) True G150811
TU190029 other downstream 3865545 18153864 ~ 18159321 (+) True G150976
TU190161 other downstream 4128861 18417180 ~ 18419471 (+) False AMCG00000550
TU190212 other downstream 4254058 18542377 ~ 18565627 (+) True AMCG00000572

Expression Profile