RNA id: AMCG00000422


Basic Information

Item Value
RNA id AMCG00000422
length 6548
RNA type mRNA
GC content 0.47
exon number 24
gene id AMCG00000422
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 14180836 ~ 14204787 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gttgactcTGACGGGGAGAATCAGTTGGTTAATGAGGTGGAGCGAATCCATTCATTTCAGCACCGGGAACAGGGAGAGCTCTCTGATTCAGACCAGTGTGGAGTAGTAGGATCAAGGCAGTTTGCGAGAGGAGGAgaaattacaagaaaataacaagGAATCGTTTTACACTGATTGGGCCCTCATCCTTCCGATGGAAGACCTCGACTTATTGCTCATCTGAAAACTTTCCAACTAAAAGTGATGAGTGTATGAGCTCAGCCTGGCCGCAGAAGGAGGACCCATGGAAGGCTCGGCGTTCTCTGTGGTGGGGGCGGTGGATGGAGAGCGCGACTCGGAGCTGGACGTCCTGAGTTTCCTGGACACCCTGGGGGGAGACAACGGCACGGCGGAGAGGTGTTACAGTGCCCACTCGCGCAGCACCGTGCTGCAGGGCCTGCCTTTCGGGGGCGTCCCCACTGTTCTCGCCATCAACTTCATCCTCTGGCTGTTTCTGCTCCTGGTCTTCTCCTGCCTGAGGAAAGCAGCCTGGGACTATGGCCGCTTGGCCCTGCTGATGGACAATGACAGCCTCACATCCCTGTTCTACGGAGAGCAGAGCGAAAAGGAGAAGTCGCCCTCGGAGTCCAGTCCCTCTGACATGGACAGTAAAGACGTGGGTTTCTGTTCATGGCTTACATCAATCTATCGCATGAAAGACGAAGAGATTCAGAGCAAGTGTGGGATCGACGCAACCATCTACCTGTCCTTCCAGCGCCACATCATCGTTCTCATGATCGTGATCTGTGTGTTCTCCGTGGCCATCATCCTGCCCGTCAACTTCTCTGGGAACCTGCTGGGGTTCAGTCCTCAGCACTTTGGAAGAACAACGATAGCCAACGTTCCCGCACAGGACCGGTTCCTGTGGCTGCACAGCATCTTTGCGCTCCTATACTTCATCTTTACGGTGATCTGTATGGCCCATCACTCCACACGTCTGGAGTACAAGGAGGATGAGAAGGTGGCCAGAACTCTGATGATAACCTCGATTCCCAAGGAAATCTCCGACCCAGGACTCATCACAAAGCATTTCCATGAAGCGTACCCGAGCTGCACCGTCACCGATGTCCGCTTCTGTTTCAACGTCCGGAAGCTGATGAAACTCGACTCCGAGAGGCGAAAGGCCATGAAGGGCCGGCTGTACTTCACTGGCAAGGCGCAGAAGGAGGGGAAGATCATGATCAAGACCCACCCCTGCGCCCAGATCTTCTGCTGTGACGTGTGCGGGTTTGAGCAGGTGGATGCCGAGCAATACTACAGTGAGCTGGAGGAGAAACTGACCGACGAGTTCAACGCGGAGAAGAACCGGATCTCCCTGAAGCGGCTGGACATGGCCTTTGTCACGTTTCAGGACGAGCGGATGACCGCCGTCATCGTGAAGGACTACAATCGCAGTGTGTGTCGGAGGAGGCTGCAGCAGTCCAGCATCACCACGGTCATCCGCTCGCACAAGTGGGGGGTGACGTATGCGCCGGCACCCAATGACATCATCTGGGAGAACCTGTCGGTGAGAGGCTCCAGGTGGTGGGTCCACTGCATCCTCCTCAACATCTGCCTGTTCATCCTGCTCTTCTTCCTCACCACGCCAGCCATCATCGTCAACACCATGGACAAGTTCAACGTCACCTTGCCTGTCGAGAGCCTCCGGAACCCCGTGGTGACCCAGTTTTTCCCCACTCTCCTCCTGTGGGCCTTCTCGGTCCTCCTACCTTTCATCGTATATTACTCCGCCTTCTTCGAGTGCCACTGGACCAGatcCAGTGAAAACCAGATTACCATGCACAAGTGCTTTTTCTTGTTGGTCTTCATGGTGATCATCTTGCCTTCCCTCGGCCTGTCCAGCTTGGATTTATTCTTTCGGTGGCTGTTTGACATGCACTTCCTTGATGAAGCAGACATAAAGTTCCAGTGTGTTTTCCTGCCTGACAATGGGGCTTTCTTTGTGAACTACGTCATCACCTCCAGTTTGATCGGCACGGCCATGGAGCTGCTGAGGATCCCGGGGCTGATGGTCTACGCCCTGCGCCTGTGCTTCGCCAAGTCCGAGGCCGAGCGCATTCATGTCAAGAGGAGCCAGGCCTACGAGTTTCAGTTTGGCTTGGAGTACGCCTGGACCATGTGTATCTTTGCGGTCAGCATGACCTACAGCATCACCTGTCCCATCATCGTTCCTTTTGGACTCGTGTACTTGGTGTTGAAGCACTTGGTGGATCGTTACAACATCTACTACGCTTACGTTCCCACCAAGCTGAACCAGAGGATTCACTCGGCCGCGGTCAGCCAGGTTATCGTGGCCCCCATCCTCTGCATGTTCTGGCTGCTCTTCTTCTCGGTGCTCAGACTGGGCCCAGTGCGTCCCATCACCCTGTTCACCTTTGTGTCCCTGCTCTTCTGCATCACCTTCTCCCTTTTTGGTCTGTGCCTGAAGAAGCTCCAGCCCGCCAAGCCAACCAGTTATCAGatgtCAGACCAGCAGACGGAGGGGGTTTTCAATGACGCGGAGAGGAGCAGCGTGTCCTCCACCCCAAACTCCAACGTGTTTGTGGCAACCGTGCTGCAGGAGCCAGAGCTGGGTTTGACCCCGATGGCATCTCCGGCACACCAGAGCTATGGCACCATGGGAAACCGCATGGACACGGCGCGGAGCGAGGAAGAGGCCCAGCCCCAGACCTTTGAAACTGACCTGCAGGACTCCCAGTACACCTTCTCCAGCGCCCCCCTGATCGACAGCGAAATTGGGTACCACTAACCACCTAATTCATCGAGTAAAAGCGATAACTctaatttaagaaacaaaataatagaaacacaaaaaaaagaatggtaACGCAAAACCAGTGTGCTGCATTTACTCAAACCTCAAGACCAACCCAATGCCTCAAGACCTACTGCTTTAAGAAGAGCCTCACACCCCGGCTTTCATCCGAGTCTCTCTAACACCGAGCGAAACATCGCCAGTGCCATAGCAGAAACTGATCCAGATTCTCCACACAGAATCCCTTTGCCTGACAGAGAAAGCCGCTGCCTCGCGCCAGCGGGGCTTGTTCGCTGCCAGTCTCGGCAGTGTTGCGCGTAAAAGATTAAGCACTGTGTGCACATGCAGGACTGAGAGATAACAGACTCGATGAAACGGTTGAGTCTCTGGGAGAATTAAACGCGACCCTCTGCAGCTTCTCGTGGAAATTCAAAGCTACTTCTCATCTCCTGACGCAAATAGAGCCAAACTGCAACTTTACACGGTTTCTTCAATTAATTTGCGccatattctttatttctgcCATTTTGTAATGTGGAAGCTTggcacattttttgtttgtatgtcggtttgttttctgtgtcatGTGCAGCTTGTGGGCCTTGTTCTGTGTTTGGCTGGCTGACAGAGATCGCcccaatgtgtttttttctgtgacaGAGGATTGGGAGCAGGTGTGACATGTGATTAGCTGCTCTTCCATCAGGCTGACAGTTCCACCCACCGCTTCTGCCCACAGACCCGAGAGCACATTATCGCCTTGAGCTCAACAGAGTCAGCAGCCTGACGCGAAAGGCCTGCTCTGAAGAAGGGGAAGGTATACGCTAACTTGCTGAGGAGGGAGGAGCTATGGCATGTACACAAGTTGATTTTAAACTCttattattgcttatttttaaggttttgtCATGTTAATGGTGAATATTTACCCTCTCCTGCCTCTAAGGGGGTTGTTGTAAATGATACAGGGCCTGGAATCGTTCAGTAAGACTAATCAAAATTTGGAAAACTGAGACGTCCATGAAGGAGAACATAGATTTAGAGAGAATCAAACACCGCAGACCCTGAAAGCGACTGTATTGccatatatattctttttttgtaCAGAATGTGAATAGGAATTCTATGTAATGTGTTCTGATCTGACCCAGGCAGTGTAACCCAGTTGATCCACATACTGTGGTGCCATTAATAAAGCCTCCCTTTGCAACTGGAAACATGCAGTTGAGATCCTCTTGCACAAACTTGCATGTCTTTGGAGAATAAAGCATTGCTTACAGTAAGCTGTCGTCTGTGATAAGACGGGAGTGTCCTGAGGGCGGAGGGTGTCTTCTGCACGGGTTTTCAAAAGATTTACAAGCATTTACAAGGAGATTACGTGTCTATGCTTTGCTGTTTCACGCAGATGGGAAGTTTGAATCACTTCCATTACATTTCCGACagtattcccccccccccaacccccgccCCATGTACCTGTCCGTTCtctcattttctgtgtttaaagaCAAAATCCTTCTCTTTGATGTTTCaggattattctttttttaagggGCTCCTTGCTCAATTGAATGTAAACAGATGATGATATTTTCCTGTATGCTCTTGCTGTGCCTTCGAATATTCCCTCATCTGACAATCCAGCATGGCCTGTTATATGCTGCATGGACTGAAGCTATGGATCTGAGGAAATAAAAGATATGAAAATGACATCCAGAATAAAACAACATGCTTCCTGTTAGGTGGAGCATGCGGTTatgagaacatttatttttttatggtctGGGAACCAAAAATACCATTGACAACGCACGCAGGTGACTCCTAATGGCGTGTAAACCATGTCCTGATGGTGCACATGTAGATCTCTGCTAACTGGGGTTCTAGGGATGGaaggaaaaacatgaaatgcatcATAGCCCTCAGTTGAAACCACTGGGTTCTGCTTTAATTTGATCTAGTATATAATGGAGGGTGCCGTTATTTCTTCCATGGTGGACAGTGTCTGGGAACCTGTGTCCGGTGGCGTTCCCCTCCGTGTCTTTGCCGTCTAAGAATCAGCAGAATATTTTCCTCTGCCGAAGGAGCAGCCATGATCTTTAGCTGAAACCCTTCTACCAGGGTTGAATCGAGTCCCTTAAAACCATATGTGTCTGACTTTACTTGGCGTTTGCCTTACACATGTTGGGGGAGTAACACAAGGGCAGTTGCAGTATGTACTCCACCATCATCTGTAGGGTTGTTAGGTTGCAGTTGATGCCCATTGTTTACgtgtaaatagtttttatttattttgatttaaaatggaCCTTGAACATGTTGTTTTAAGTTCTCACACCTGCAATCGAGGCCATACATGTCCTAGGGCCGTGACCATCTTCTGGTCACTTTTGACGAGGTTTGACTCACAGAAACATCATGTTCTCACAGTGTACGAGCAAACCTGATATCTCCCGTCTCCAAGCTTCCTAAAACACCTGCTGTGCGTTAATGTAAATCCCACGCCTGAAGTGGAGAGCATGCTTGTTTTTATAGTCTTTGCATCCTGAATGGTTCCAGTTAACACCAAAATCTATAGCCATTTACAGCCAGCAGTCCAAAAGACGGCGGTGTGTGTGGATATGTGGGGGTACTGTGAGTTGCTATATGGGTATGGAGTTACTATATTAGTGGAAAGTTGCTGTTCCATTTGAGGGATAAAAACTCTAAATTGAATGCCAGCATAGACTTGAAAATAAAGCGATTTTTCTGGTTTCCTTTACCGAATTCAAACCAAAAACTGCCAATTATACTGTAATGTTCGCAATGTTACTACCATCTGAGAAATTAATAGAACACCGCAAGTACTGACTTTACCAAAAATACAAAcgcttaaaaaaaagaacacatcAGAGGATTTTCATTAAGAAAACAGACACTCGCTTTTATCTGGCGGTGTGACCGAGGTTTATGTGTACAATTCATGATTCTTTTTCCAGTAAAGtttaattcatttcagttttacaacAGCCACAGCAGTGgattgccaaaaaaaaacaaccatcgtttggaaatatatatgcaacttagagaaatgttttttttttttttttcttgtgtttgttttcaaagtatGATCATGTAAATAGGGAATGTatccatcaaataaaataaaataaggtttGAGTTTTTATTAATCATATGTGTTACAATTCTTATCAACACGGATGACTATTTAAGTTATGCTAATCATTTTGCAACTTTTTTCTCAAGGAAATATCAAAAATTTCAGCATTTGTGTGACACCAATTTATCCTTGTTTTTAGTATAGGTTCGTATTTACAGTAGGTGACACAATTTCTCTTAGTTAATGTCTGGTATGAGGCAGCCTTAAAATACAGACAGCCAAAGAGTTAGCCAGCATGaagaattaaaacatatttcataatttgAGGGTTCTTGATCTATTTCGGACTCATATTTGGCTTCTCCAGACTCCTTTGGCCTTATTTCTGCCCTAAACAGGAAATTAGCAGTTTTGCAAcactataattaaatgtataattatagtTTACTCtgaagaatttattttttaaattaaaaataaaattatatttccaaaAAACTTCTGtcatctaaatctaaatgtggATTTTTTAATATGAAGCAGAGGTGGATGGATACAGTGTTGTACTGACCGCTCTCAGATAGAACTGGTTTTCTGTAATGAGTTTAAAGTACTGTAAGTCTGATTAAAGTTTAAACTGCTGCTACA

Function

GO: NA

KEGG:

id description
K21989 TMEM63, CSC1; calcium permeable stress-gated cation channel

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188905 lncRNA upstream 434720 13739776 ~ 13746116 (+) True G150106
TU188855 lncRNA upstream 530785 13649403 ~ 13650051 (+) True G150066
TU188827 lncRNA upstream 767772 13412865 ~ 13413064 (+) True G150042
TU188779 lncRNA upstream 1212694 12966975 ~ 12968142 (+) False AMCG00000381
TU188614 lncRNA upstream 1339163 12833539 ~ 12841673 (+) True G149869
TU189157 lncRNA downstream 260105 14464892 ~ 14465302 (+) True G150303
TU189234 lncRNA downstream 528445 14733232 ~ 14733440 (+) True G150364
TU189295 lncRNA downstream 726991 14931778 ~ 14939473 (+) True AMCG00000443
TU189297 lncRNA downstream 726991 14931778 ~ 14944400 (+) False AMCG00000443
TU189346 lncRNA downstream 919923 15124710 ~ 15125951 (+) True G150455
AMCG00000411 mRNA upstream 21746 14157036 ~ 14159090 (+) True AMCG00000411
AMCG00000412 mRNA upstream 29664 14149886 ~ 14151172 (+) False AMCG00000412
AMCG00000410 mRNA upstream 76939 14096501 ~ 14103897 (+) True AMCG00000410
AMCG00000406 mRNA upstream 134066 14037644 ~ 14046770 (+) True AMCG00000406
AMCG00000407 mRNA upstream 146953 14029182 ~ 14033883 (+) True AMCG00000407
AMCG00000424 mRNA downstream 19377 14224164 ~ 14228809 (+) True AMCG00000424
AMCG00000423 mRNA downstream 30453 14235240 ~ 14245576 (+) True AMCG00000423
AMCG00000421 mRNA downstream 56622 14261409 ~ 14282672 (+) True AMCG00000421
AMCG00000417 mRNA downstream 81229 14286016 ~ 14288319 (+) True AMCG00000417
AMCG00000416 mRNA downstream 111374 14316161 ~ 14340047 (+) True AMCG00000416
TU189044 other upstream 26996 14133138 ~ 14153840 (+) True AMCG00000412
TU188861 other upstream 488247 13690839 ~ 13692589 (+) True G150069
TU188603 other upstream 1452933 12679670 ~ 12727903 (+) True G149859
TU188404 other upstream 2195121 11982460 ~ 11985715 (+) False AMCG00000352
TU188165 other upstream 3645699 10534590 ~ 10535137 (+) True G149525
TU189714 other downstream 2731206 16935993 ~ 16938282 (+) True G150750
TU189794 other downstream 3340667 17545454 ~ 17548508 (+) True G150811
TU190029 other downstream 3949077 18153864 ~ 18159321 (+) True G150976
TU190161 other downstream 4212393 18417180 ~ 18419471 (+) False AMCG00000550
TU190212 other downstream 4337590 18542377 ~ 18565627 (+) True AMCG00000572

Expression Profile